Strain Fitness in Pseudomonas putida KT2440 around PP_4401

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
4,991,233	+				-0.8
4,991,233	+				+0.3
4,991,233	+				-1.5
4,991,249	+				+0.3
4,991,249	+				+0.7
4,991,249	+				+0.5
4,991,249	+				+0.7
4,991,249	+				+0.5
4,991,249	+				-0.3
4,991,249	+				-0.1
4,991,250	-				+1.9
4,991,250	-				+1.1
4,991,250	-				-1.0
4,991,250	-				-0.5
4,991,250	-				-1.6
4,991,250	-				-0.2
4,991,281	+				+0.3
4,991,281	+				-0.4
4,991,282	-				-1.3
4,991,324	+				-1.7
4,991,410	-		PP_4400	0.10	+1.3
4,991,410	-		PP_4400	0.10	-2.1
4,991,410	-		PP_4400	0.10	-2.6
4,991,444	-		PP_4400	0.17	-1.9
4,991,444	-		PP_4400	0.17	-1.7
4,991,473	-		PP_4400	0.23	+0.3
4,991,550	+		PP_4400	0.39	-0.1
4,991,551	-		PP_4400	0.39	-3.2
4,991,551	-		PP_4400	0.39	-1.3
4,991,551	-		PP_4400	0.39	-1.2
4,991,638	+		PP_4400	0.57	-1.4
4,991,639	-		PP_4400	0.57	+0.0
4,991,845	+				-2.4
4,991,952	+				-0.3
4,991,953	-				-1.9
4,992,054	-				-2.4
4,992,197	+		PP_4401	0.12	-0.9
4,992,359	+		PP_4401	0.26	-3.3
4,992,359	+		PP_4401	0.26	-0.8
4,992,360	-		PP_4401	0.26	-0.6
4,992,360	-		PP_4401	0.26	-1.3
4,992,552	-		PP_4401	0.41	-4.4
4,992,552	-		PP_4401	0.41	-1.8
4,992,552	-		PP_4401	0.41	-0.6
4,992,552	-		PP_4401	0.41	-2.0
4,992,653	-		PP_4401	0.49	-0.5
4,992,689	-		PP_4401	0.52	-2.3
4,992,732	+		PP_4401	0.56	-3.3
4,992,732	+		PP_4401	0.56	-1.4
4,992,733	-		PP_4401	0.56	-0.0
4,992,733	-		PP_4401	0.56	-1.9
4,992,733	-		PP_4401	0.56	-0.5
4,992,734	+		PP_4401	0.56	-0.3
4,992,847	+		PP_4401	0.65	+0.5
4,992,890	+		PP_4401	0.69	-0.3
4,992,890	+		PP_4401	0.69	-2.9
4,992,891	-		PP_4401	0.69	-0.6
4,992,891	-		PP_4401	0.69	-1.5
4,993,005	-		PP_4401	0.78	-0.7
4,993,005	-				-0.1
4,993,223	+				-1.6
4,993,223	+				-1.7
4,993,223	+				-0.6
4,993,224	-				+1.1
4,993,224	-				-0.8
4,993,224	-				-4.7
4,993,224	-				-1.6
4,993,224	-				-4.7
4,993,328	+				-4.4
4,993,329	-				-0.0
4,993,420	-		PP_4402	0.10	-0.0
4,993,420	-		PP_4402	0.10	-2.4
4,993,465	-		PP_4402	0.15	-1.8
4,993,578	+		PP_4402	0.26	-1.0
4,993,578	+		PP_4402	0.26	+0.5
4,993,578	+		PP_4402	0.26	-2.5
4,993,579	-		PP_4402	0.26	-1.3
4,993,579	-		PP_4402	0.26	-1.5
4,993,692	+		PP_4402	0.37	-0.7
4,993,692	+		PP_4402	0.37	+0.1
4,993,692	+		PP_4402	0.37	+1.2
4,993,692	+		PP_4402	0.37	-2.2
4,993,692	+		PP_4402	0.37	-0.8
4,993,693	-		PP_4402	0.37	+0.3
4,993,693	-		PP_4402	0.37	-0.0
4,993,693	-		PP_4402	0.37	-0.9
4,993,776	+		PP_4402	0.45	-3.0
4,993,777	-		PP_4402	0.45	-0.8
4,993,777	-		PP_4402	0.45	-2.3
4,993,777	-		PP_4402	0.45	-1.1
4,993,851	+		PP_4402	0.52	-0.4
4,993,852	-		PP_4402	0.52	-1.5
4,993,852	-		PP_4402	0.52	-1.2
4,993,852	-		PP_4402	0.52	-1.4
4,993,889	-		PP_4402	0.56	-1.3
4,993,932	+		PP_4402	0.60	-2.4
4,993,935	+		PP_4402	0.61	-0.9
4,993,935	+		PP_4402	0.61	-0.9
4,993,936	-		PP_4402	0.61	-3.2
4,993,942	+		PP_4402	0.61	-1.5
4,993,998	+		PP_4402	0.67	+0.6
4,993,999	-		PP_4402	0.67	+0.0
4,994,013	+		PP_4402	0.68	-2.7
4,994,014	-		PP_4402	0.68	-1.9
4,994,014	-		PP_4402	0.68	-1.5
4,994,100	-		PP_4402	0.77	-1.5