Strain Fitness in Pseudomonas putida KT2440 around PP_4022

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
4,533,686	+				-0.6
4,533,686	+				-3.3
4,533,687	-				+0.8
4,533,695	+				+0.9
4,533,695	+				-0.9
4,533,695	+				-0.7
4,533,696	-				-1.2
4,533,738	+				+0.4
4,533,738	+				+1.1
4,533,738	+				+0.5
4,533,738	+				+0.1
4,533,738	+				-0.0
4,533,738	+				+0.5
4,533,738	+				+0.7
4,533,738	+				-0.1
4,533,738	+				+0.4
4,533,738	+				-0.7
4,533,738	+				+0.9
4,533,738	+				+0.3
4,533,738	+				+0.2
4,533,739	-				+0.6
4,533,739	-				-1.8
4,533,739	-				+1.5
4,533,739	-				+1.0
4,533,739	-				+0.8
4,533,739	-				+0.3
4,533,739	-				-0.3
4,533,742	+				+0.0
4,533,742	+				-0.9
4,533,743	-				-0.1
4,533,760	+				+0.5
4,533,771	+				-0.2
4,533,772	-				-1.1
4,533,928	+		PP_4021	0.24	+1.3
4,533,929	-		PP_4021	0.24	-1.7
4,533,954	+		PP_4021	0.27	+0.9
4,533,967	+		PP_4021	0.28	-0.4
4,534,048	-		PP_4021	0.38	+0.6
4,534,048	-		PP_4021	0.38	+0.0
4,534,048	-		PP_4021	0.38	-0.9
4,534,117	+		PP_4021	0.46	+1.0
4,534,117	+		PP_4021	0.46	+0.2
4,534,117	+		PP_4021	0.46	-0.5
4,534,230	+		PP_4021	0.60	+0.9
4,534,230	+		PP_4021	0.60	+0.3
4,534,231	-		PP_4021	0.60	+1.7
4,534,231	-		PP_4021	0.60	+0.7
4,534,236	+		PP_4021	0.61	-0.8
4,534,320	+		PP_4021	0.71	+1.5
4,534,320	+		PP_4021	0.71	+0.1
4,534,320	+		PP_4021	0.71	-0.3
4,534,320	+		PP_4021	0.71	-0.2
4,534,320	+		PP_4021	0.71	+0.5
4,534,321	-		PP_4021	0.71	-1.4
4,534,321	-		PP_4021	0.71	+1.0
4,534,321	-		PP_4021	0.71	-0.2
4,534,321	-		PP_4021	0.71	-0.3
4,534,441	+		PP_4021	0.85	+0.1
4,534,441	+		PP_4021	0.85	-0.5
4,534,442	-		PP_4021	0.85	-0.6
4,534,482	+				+0.1
4,534,483	-				+1.0
4,534,483	-				-0.1
4,534,596	+				-2.8
4,534,596	+				-1.0
4,534,596	+				+0.1
4,534,596	+				-0.3
4,534,596	+				-1.0
4,534,653	+				-3.4
4,534,787	-		PP_4022	0.13	+0.8
4,534,808	+		PP_4022	0.16	-3.7
4,534,817	+		PP_4022	0.17	-1.4
4,534,825	+		PP_4022	0.18	+1.3
4,534,825	+		PP_4022	0.18	-2.1
4,534,825	+		PP_4022	0.18	+0.9
4,534,872	-		PP_4022	0.24	-0.0
4,534,872	-		PP_4022	0.24	-0.1
4,534,872	-		PP_4022	0.24	-0.7
4,534,872	-		PP_4022	0.24	+1.3
4,534,915	+		PP_4022	0.29	+0.6
4,534,916	-		PP_4022	0.30	+0.7
4,534,920	-		PP_4022	0.30	+0.2
4,534,920	-		PP_4022	0.30	+1.2
4,534,961	-		PP_4022	0.35	-2.2
4,534,991	+		PP_4022	0.39	+0.7
4,534,992	-		PP_4022	0.39	-1.9
4,534,992	-		PP_4022	0.39	+0.6
4,534,992	-		PP_4022	0.39	+1.0
4,534,992	-		PP_4022	0.39	+0.0
4,534,992	-		PP_4022	0.39	-0.4
4,534,997	+		PP_4022	0.40	+1.8
4,534,997	+		PP_4022	0.40	+0.8
4,534,998	-		PP_4022	0.40	+1.1
4,535,017	+		PP_4022	0.42	+0.7
4,535,018	-		PP_4022	0.42	+0.1
4,535,018	-		PP_4022	0.42	-0.1
4,535,021	+		PP_4022	0.43	+1.5
4,535,021	+		PP_4022	0.43	+1.7
4,535,174	-		PP_4022	0.62	-0.4
4,535,259	+		PP_4022	0.73	+1.1
4,535,378	+		PP_4022	0.88	+0.4
4,535,379	-		PP_4022	0.88	+1.2
4,535,435	-				-0.3
4,535,523	+				-0.1
4,535,529	-				-0.2
4,535,536	-				-1.3
4,535,541	+				+0.2
4,535,542	-				+0.7
4,535,598	+				+0.1
4,535,598	+				-0.4
4,535,599	-				+0.0
4,535,599	-				-3.4
4,535,599	-				-0.1
4,535,609	-				+0.7
4,535,609	-				+0.5
4,535,728	-				-0.8
4,535,783	+				-0.6
4,535,783	+				-0.7
4,535,783	+				+1.2
4,535,783	+				+0.8
4,535,784	-				+0.2
4,535,784	-				+0.5
4,535,786	+				-0.6
4,535,787	-				+0.4
4,535,787	-				+0.0
4,535,876	+				+0.0
4,535,876	+				-1.6
4,535,876	+				+1.3
4,535,876	+				+1.4
4,535,876	+				+0.3
4,535,877	-				-1.8
4,535,877	-				-1.3
4,535,936	+				-0.9
4,535,936	+				+0.3
4,535,936	+				-0.7
4,535,937	-				-0.4
4,535,937	-				-0.1
4,535,937	-				-1.1
4,536,032	+				+0.3
4,536,032	+				+0.6
4,536,108	+				+0.5
4,536,108	+				-0.2
4,536,194	+				+0.1
4,536,195	-				+1.1
4,536,195	-				+0.0
4,536,195	-				-1.0
4,536,195	-				-0.0
4,536,195	-				+0.8
4,536,196	+				-0.8
4,536,196	+				-0.6
4,536,196	+				+0.7
4,536,197	-				+1.9
4,536,205	-				+0.5