Strain Fitness in Pseudomonas putida KT2440 around PP_4012

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
4,521,253	+		PP_4011	0.61	+1.2
4,521,253	+		PP_4011	0.61	+0.4
4,521,254	-		PP_4011	0.61	+0.8
4,521,254	-		PP_4011	0.61	-0.7
4,521,254	-		PP_4011	0.61	-0.5
4,521,254	-		PP_4011	0.61	+0.4
4,521,254	-		PP_4011	0.61	+1.0
4,521,354	+		PP_4011	0.69	+0.8
4,521,354	+		PP_4011	0.69	+0.2
4,521,354	+		PP_4011	0.69	+1.7
4,521,354	+		PP_4011	0.69	+0.9
4,521,354	+		PP_4011	0.69	+1.5
4,521,354	+		PP_4011	0.69	-0.3
4,521,355	-		PP_4011	0.70	-1.7
4,521,355	-		PP_4011	0.70	-1.3
4,521,355	-		PP_4011	0.70	-0.3
4,521,355	-		PP_4011	0.70	-2.2
4,521,355	-		PP_4011	0.70	+0.8
4,521,355	-		PP_4011	0.70	+0.1
4,521,355	-		PP_4011	0.70	+1.5
4,521,355	-		PP_4011	0.70	+1.1
4,521,355	-		PP_4011	0.70	+0.7
4,521,358	+		PP_4011	0.70	+1.1
4,521,358	+		PP_4011	0.70	+1.1
4,521,358	+		PP_4011	0.70	+0.8
4,521,358	+		PP_4011	0.70	+0.7
4,521,358	+		PP_4011	0.70	+0.8
4,521,358	+		PP_4011	0.70	+0.4
4,521,358	+		PP_4011	0.70	+0.6
4,521,358	+		PP_4011	0.70	-0.7
4,521,358	+		PP_4011	0.70	+0.9
4,521,358	+		PP_4011	0.70	+0.9
4,521,358	+		PP_4011	0.70	+0.8
4,521,358	+		PP_4011	0.70	-1.0
4,521,359	-		PP_4011	0.70	-0.5
4,521,359	-		PP_4011	0.70	+0.6
4,521,359	-		PP_4011	0.70	+0.7
4,521,359	-		PP_4011	0.70	+1.5
4,521,359	-		PP_4011	0.70	-0.2
4,521,359	-		PP_4011	0.70	-2.9
4,521,359	-		PP_4011	0.70	+2.3
4,521,359	-		PP_4011	0.70	-0.4
4,521,359	-		PP_4011	0.70	+1.0
4,521,359	-		PP_4011	0.70	+0.3
4,521,359	-		PP_4011	0.70	+1.6
4,521,359	-		PP_4011	0.70	+1.6
4,521,359	-		PP_4011	0.70	+0.8
4,521,359	-		PP_4011	0.70	-0.0
4,521,359	-		PP_4011	0.70	-1.3
4,521,448	+		PP_4011	0.77	+0.2
4,521,449	-		PP_4011	0.77	+0.6
4,521,449	-		PP_4011	0.77	+0.2
4,521,449	-		PP_4011	0.77	-0.8
4,521,449	-		PP_4011	0.77	+0.5
4,521,449	-		PP_4011	0.77	+0.1
4,521,489	-		PP_4011	0.80	-1.5
4,521,489	-		PP_4011	0.80	+1.4
4,521,499	+		PP_4011	0.81	+0.4
4,521,499	+		PP_4011	0.81	+1.3
4,521,499	+		PP_4011	0.81	+0.1
4,521,500	-		PP_4011	0.81	+1.1
4,521,527	-		PP_4011	0.83	+1.4
4,521,562	+		PP_4011	0.86	-0.6
4,521,640	+				-0.1
4,521,640	+				+0.8
4,521,640	+				-0.3
4,521,640	+				+0.5
4,521,640	+				+0.5
4,521,641	-				+0.2
4,521,668	+				+0.8
4,521,747	-				+0.0
4,521,747	-				+1.5
4,521,847	-				-1.3
4,521,847	-				+1.6
4,521,859	+				+0.9
4,521,861	+				+0.5
4,521,862	-				+2.5
4,521,893	+				+0.7
4,521,893	+				-0.1
4,521,893	+				+0.4
4,521,894	-				+1.6
4,521,911	-				-1.5
4,521,912	+				+0.3
4,521,969	+				+0.5
4,522,098	+				-2.8
4,522,098	+				-0.8
4,524,375	+				-0.9
4,524,376	-				+1.8
4,524,391	+				+0.6
4,524,391	+				+1.4
4,524,444	+				+0.2
4,524,444	+				+0.7
4,524,471	-				-3.9
4,524,471	-				-1.0
4,524,483	-				-0.1
4,524,536	+				+1.2
4,524,537	-				+0.6
4,524,777	+		PP_4013	0.47	-0.2
4,524,777	+		PP_4013	0.47	-0.8
4,524,778	-		PP_4013	0.47	-2.5
4,524,778	-		PP_4013	0.47	+0.8
4,524,778	-		PP_4013	0.47	+0.2
4,524,783	+		PP_4013	0.48	-1.6
4,524,784	-		PP_4013	0.49	-0.6
4,524,875	+		PP_4013	0.69	-0.5
4,524,967	-				-2.7
4,525,055	+				-1.5