Experiment: 3-methyl-1-butanol 0.1 vol% (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3985 and PP_3986 are separated by 18 nucleotides PP_3986 and PP_3987 are separated by 75 nucleotides PP_3987 and PP_5651 are separated by 51 nucleotides
PP_3985: PP_3985 - transposase, at 4,493,708 to 4,495,240
_3985
PP_3986: PP_3986 - transposase, at 4,495,259 to 4,495,615
_3986
PP_3987: PP_3987 - Site-specific recombinase, phage integrase family, at 4,495,691 to 4,496,650
_3987
PP_5651: PP_5651 - conserved protein of unknown function, at 4,496,702 to 4,497,949
_5651
Position (kb) 4495
4496
4497 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4495.668 kb on + strand at 4495.701 kb on + strand at 4495.820 kb on + strand, within PP_3987 at 4495.938 kb on + strand, within PP_3987 at 4495.939 kb on - strand, within PP_3987 at 4496.002 kb on - strand, within PP_3987 at 4496.012 kb on + strand, within PP_3987 at 4496.015 kb on - strand, within PP_3987 at 4496.015 kb on - strand, within PP_3987 at 4496.099 kb on + strand, within PP_3987 at 4496.174 kb on + strand, within PP_3987 at 4496.234 kb on - strand, within PP_3987 at 4496.234 kb on - strand, within PP_3987 at 4496.237 kb on + strand, within PP_3987 at 4496.237 kb on + strand, within PP_3987 at 4496.266 kb on + strand, within PP_3987 at 4496.266 kb on + strand, within PP_3987 at 4496.267 kb on - strand, within PP_3987 at 4496.267 kb on - strand, within PP_3987 at 4496.325 kb on + strand, within PP_3987 at 4496.325 kb on + strand, within PP_3987 at 4496.325 kb on + strand, within PP_3987 at 4496.376 kb on + strand, within PP_3987 at 4496.376 kb on + strand, within PP_3987 at 4496.376 kb on + strand, within PP_3987 at 4496.487 kb on + strand, within PP_3987 at 4496.487 kb on + strand, within PP_3987 at 4496.523 kb on + strand, within PP_3987 at 4496.524 kb on - strand, within PP_3987 at 4496.575 kb on - strand at 4496.610 kb on + strand at 4496.611 kb on - strand at 4496.611 kb on - strand at 4496.612 kb on + strand at 4496.613 kb on - strand at 4496.613 kb on - strand at 4496.614 kb on + strand at 4496.615 kb on - strand at 4496.634 kb on + strand at 4496.704 kb on - strand at 4496.712 kb on - strand at 4496.731 kb on + strand at 4496.761 kb on - strand at 4496.792 kb on + strand at 4496.793 kb on - strand at 4496.860 kb on + strand, within PP_5651 at 4496.903 kb on - strand, within PP_5651 at 4496.962 kb on + strand, within PP_5651 at 4496.962 kb on + strand, within PP_5651 at 4497.062 kb on - strand, within PP_5651 at 4497.082 kb on + strand, within PP_5651 at 4497.102 kb on - strand, within PP_5651 at 4497.145 kb on + strand, within PP_5651 at 4497.327 kb on - strand, within PP_5651 at 4497.400 kb on + strand, within PP_5651 at 4497.455 kb on + strand, within PP_5651 at 4497.456 kb on - strand, within PP_5651 at 4497.508 kb on + strand, within PP_5651
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C) remove 4,495,668 + +0.4 4,495,701 + +0.1 4,495,820 + PP_3987 0.13 -1.8 4,495,938 + PP_3987 0.26 +1.5 4,495,939 - PP_3987 0.26 -1.5 4,496,002 - PP_3987 0.32 +0.6 4,496,012 + PP_3987 0.33 +0.3 4,496,015 - PP_3987 0.34 +0.0 4,496,015 - PP_3987 0.34 +0.4 4,496,099 + PP_3987 0.42 +0.4 4,496,174 + PP_3987 0.50 +0.6 4,496,234 - PP_3987 0.57 -0.4 4,496,234 - PP_3987 0.57 +1.1 4,496,237 + PP_3987 0.57 +0.3 4,496,237 + PP_3987 0.57 +1.4 4,496,266 + PP_3987 0.60 +1.2 4,496,266 + PP_3987 0.60 -0.3 4,496,267 - PP_3987 0.60 +1.0 4,496,267 - PP_3987 0.60 +0.2 4,496,325 + PP_3987 0.66 +0.2 4,496,325 + PP_3987 0.66 +0.6 4,496,325 + PP_3987 0.66 +0.5 4,496,376 + PP_3987 0.71 +0.0 4,496,376 + PP_3987 0.71 +0.6 4,496,376 + PP_3987 0.71 +1.2 4,496,487 + PP_3987 0.83 -1.4 4,496,487 + PP_3987 0.83 +1.4 4,496,523 + PP_3987 0.87 +0.9 4,496,524 - PP_3987 0.87 +0.6 4,496,575 - +0.4 4,496,610 + +0.9 4,496,611 - +0.4 4,496,611 - -0.3 4,496,612 + -2.3 4,496,613 - -0.0 4,496,613 - +1.3 4,496,614 + -0.8 4,496,615 - +2.4 4,496,634 + -2.0 4,496,704 - +1.0 4,496,712 - +1.3 4,496,731 + +0.5 4,496,761 - +0.0 4,496,792 + -0.8 4,496,793 - +0.2 4,496,860 + PP_5651 0.13 +0.2 4,496,903 - PP_5651 0.16 -0.6 4,496,962 + PP_5651 0.21 +0.4 4,496,962 + PP_5651 0.21 -0.1 4,497,062 - PP_5651 0.29 +0.8 4,497,082 + PP_5651 0.30 -0.4 4,497,102 - PP_5651 0.32 +0.5 4,497,145 + PP_5651 0.35 -3.0 4,497,327 - PP_5651 0.50 +0.2 4,497,400 + PP_5651 0.56 -0.9 4,497,455 + PP_5651 0.60 +0.9 4,497,456 - PP_5651 0.60 +0.1 4,497,508 + PP_5651 0.65 +0.1
Or see this region's nucleotide sequence