Strain Fitness in Pseudomonas putida KT2440 around PP_3969

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
4,477,230	+		PP_3968	0.32	-0.7
4,477,248	-		PP_3968	0.34	-0.2
4,477,338	-		PP_3968	0.42	+0.4
4,477,385	+		PP_3968	0.46	-0.6
4,477,385	+		PP_3968	0.46	-0.8
4,477,386	-		PP_3968	0.46	+1.0
4,477,386	-		PP_3968	0.46	+0.3
4,477,409	+		PP_3968	0.48	-1.5
4,477,468	-		PP_3968	0.53	+0.6
4,477,485	+		PP_3968	0.55	+2.0
4,477,485	+		PP_3968	0.55	+1.2
4,477,486	-		PP_3968	0.55	+1.3
4,477,530	+		PP_3968	0.59	-0.2
4,477,564	+		PP_3968	0.62	+2.2
4,477,565	-		PP_3968	0.62	-0.9
4,477,671	+		PP_3968	0.71	+0.3
4,477,671	+		PP_3968	0.71	+0.3
4,477,672	-		PP_3968	0.71	-2.3
4,477,731	+		PP_3968	0.77	+1.5
4,477,742	+		PP_3968	0.78	+0.3
4,477,780	-		PP_3968	0.81	-1.7
4,477,780	-		PP_3968	0.81	-2.5
4,477,832	+		PP_3968	0.86	-1.1
4,477,833	-		PP_3968	0.86	-0.1
4,477,833	-		PP_3968	0.86	-0.1
4,477,839	-		PP_3968	0.86	+1.0
4,477,839	-		PP_3968	0.86	-0.2
4,477,905	+				+0.5
4,477,906	-				-0.4
4,477,962	-				-0.0
4,477,982	-				+1.0
4,477,982	-				+1.6
4,478,015	+				-0.4
4,478,016	-				-0.3
4,478,016	-				-0.2
4,478,016	-				-0.4
4,478,100	+				-1.7
4,478,100	+				+0.3
4,478,100	+				-0.5
4,478,100	+				+0.6
4,478,100	+				-0.1
4,478,101	-				-0.9
4,478,101	-				-0.1
4,478,101	-				+1.5
4,478,101	-				-2.1
4,478,102	+				+0.2
4,478,102	+				-0.5
4,478,103	-				-1.1
4,478,116	-				-0.1
4,478,116	-				+0.4
4,478,122	-				-1.4
4,478,134	+				+0.0
4,478,135	-				+0.8
4,478,135	-				-3.6
4,478,135	-				+0.9
4,478,138	+				-1.8
4,478,139	-				-3.8
4,478,139	-				+0.6
4,478,139	-				-0.1
4,478,158	+				-0.5
4,478,158	+				-0.0
4,478,158	+				-0.2
4,478,161	+				-1.2
4,478,161	+				+1.1
4,478,161	+				-1.4
4,478,161	+				+1.0
4,478,161	+				+0.2
4,478,162	-				+2.5
4,478,287	+		PP_3969	0.41	+1.5
4,478,294	+		PP_3969	0.43	+0.1
4,478,294	+		PP_3969	0.43	+1.7
4,478,295	-		PP_3969	0.43	-0.4
4,478,302	+		PP_3969	0.45	-0.8
4,478,302	+		PP_3969	0.45	-1.5
4,478,302	+		PP_3969	0.45	+1.5
4,478,302	+		PP_3969	0.45	+1.1
4,478,302	+		PP_3969	0.45	+2.4
4,478,303	-		PP_3969	0.45	+1.3
4,478,303	-		PP_3969	0.45	+0.4
4,478,303	-		PP_3969	0.45	+0.1
4,478,335	+		PP_3969	0.54	-0.1
4,478,416	+		PP_3969	0.76	+2.7
4,478,438	+		PP_3969	0.82	+0.9
4,478,488	+				-1.9
4,478,536	+				+0.6
4,478,541	+				+0.1
4,478,541	+				+0.7
4,478,619	+				+1.7
4,478,649	+				+0.4
4,478,649	+				+1.5
4,478,650	-				+0.7
4,478,650	-				-0.1
4,478,665	+				+0.2
4,478,665	+				+0.0
4,478,666	-				-0.5
4,478,676	+				-0.1
4,478,676	+				+4.9
4,478,738	+				+0.4
4,478,738	+				-0.5
4,478,739	-				+2.0
4,478,739	-				-2.4
4,478,974	-		PP_3970	0.27	-2.2
4,479,008	+		PP_3970	0.30	+0.2
4,479,008	+		PP_3970	0.30	+0.0
4,479,008	+		PP_3970	0.30	+0.3
4,479,008	+		PP_3970	0.30	-0.7
4,479,008	+		PP_3970	0.30	-0.7
4,479,008	+		PP_3970	0.30	+0.6
4,479,008	+		PP_3970	0.30	+1.2
4,479,034	+		PP_3970	0.32	-0.2
4,479,046	+		PP_3970	0.33	-1.3
4,479,047	-		PP_3970	0.33	+1.3
4,479,077	-		PP_3970	0.35	-1.6
4,479,077	-		PP_3970	0.35	-0.2
4,479,077	-		PP_3970	0.35	+0.2
4,479,077	-				+0.5
4,479,081	+		PP_3970	0.36	+1.2
4,479,153	-		PP_3970	0.42	-0.5
4,479,226	+		PP_3970	0.48	+0.6
4,479,227	-		PP_3970	0.48	-0.1
4,479,227	-		PP_3970	0.48	+0.6
4,479,227	-		PP_3970	0.48	-1.5
4,479,227	-		PP_3970	0.48	+0.7
4,479,325	+		PP_3970	0.56	-0.2