Strain Fitness in Pseudomonas putida KT2440 around PP_3939

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
4,440,289	-		PP_3935	0.74	-0.7
4,440,289	-		PP_3935	0.74	-0.7
4,440,289	-		PP_3935	0.74	+0.4
4,440,289	-		PP_3935	0.74	+1.3
4,440,372	-				+2.1
4,440,438	+				+1.1
4,440,439	-				+0.2
4,440,464	-				-0.1
4,440,464	-				+0.6
4,440,464	-				+0.3
4,440,606	+				-1.3
4,440,606	+				+0.3
4,440,606	+				-0.0
4,440,606	+				-1.4
4,440,607	-				+0.7
4,440,692	+				+0.1
4,440,697	+				-2.5
4,440,697	+				-0.7
4,440,698	-				-0.5
4,440,741	+				+1.3
4,440,741	+				+0.3
4,440,742	-				-0.7
4,440,748	-				-0.6
4,440,763	+				-2.4
4,440,785	+				-2.2
4,440,786	-				+1.0
4,440,794	+				-1.1
4,440,794	+				-0.5
4,440,830	+				-0.7
4,440,830	+				-0.1
4,440,830	+				+0.7
4,440,864	+				-0.3
4,440,864	+				-0.2
4,440,864	+				-0.5
4,440,864	+				-0.2
4,440,865	-				-1.0
4,440,928	+		PP_3938	0.25	+0.4
4,440,955	-		PP_3938	0.40	-0.8
4,441,175	+				+0.5
4,441,175	+				-1.0
4,441,176	-				+0.1
4,441,176	-				+0.4
4,441,193	+				+1.3
4,441,193	+				+1.3
4,441,193	+				+0.3
4,441,193	+				-0.0
4,441,193	+				+0.6
4,441,193	+				+0.5
4,441,193	+				-0.1
4,441,193	+				-0.5
4,441,193	+				+1.2
4,441,194	-				-3.6
4,441,194	-				+0.2
4,441,231	+				+0.5
4,441,231	+				+0.4
4,441,232	-				+0.8
4,441,232	-				-1.1
4,441,232	-				+1.0
4,441,258	-				+1.2
4,441,283	+				-0.2
4,441,283	+				-2.1
4,441,283	+				+0.3
4,441,283	+				+0.7
4,441,283	+				+1.3
4,441,283	+				-0.2
4,441,283	+				+0.3
4,441,283	+				-0.7
4,441,283	+				-0.1
4,441,283	+				-2.2
4,441,283	+				-0.1
4,441,284	-				-0.3
4,441,284	-				-1.5
4,441,284	-				+0.3
4,441,284	-				-0.5
4,441,284	-				+0.1
4,441,284	-				-1.8
4,441,284	-				-1.3
4,441,284	-				+0.5
4,441,284	-				-2.3
4,441,284	-				-2.4
4,441,285	+				-0.4
4,441,286	-				-1.1
4,441,286	-				+1.8
4,441,365	+				+0.5
4,441,365	+				+0.5
4,441,366	-				-0.3
4,441,440	+		PP_3939	0.16	-0.4
4,441,441	-		PP_3939	0.16	-0.3
4,441,441	-		PP_3939	0.16	-0.0
4,441,489	-		PP_3939	0.19	+2.4
4,441,489	-		PP_3939	0.19	-1.8
4,441,549	+		PP_3939	0.24	+1.8
4,441,549	+		PP_3939	0.24	-1.4
4,441,549	+		PP_3939	0.24	+0.9
4,441,549	+		PP_3939	0.24	+0.6
4,441,549	+		PP_3939	0.24	-1.1
4,441,550	-		PP_3939	0.24	-0.1
4,441,552	+		PP_3939	0.24	-1.2
4,441,578	-		PP_3939	0.26	-0.2
4,441,624	-		PP_3939	0.30	-0.5
4,441,624	-		PP_3939	0.30	+1.6
4,441,630	+		PP_3939	0.30	-3.6
4,441,723	-		PP_3939	0.38	-0.8
4,441,777	+		PP_3939	0.42	-0.0
4,441,777	+		PP_3939	0.42	-1.6
4,441,779	+		PP_3939	0.42	-0.1
4,441,779	+		PP_3939	0.42	+0.2
4,441,780	-		PP_3939	0.42	+0.3
4,441,780	-		PP_3939	0.42	+0.5
4,441,794	+		PP_3939	0.43	-0.3
4,441,794	+		PP_3939	0.43	-1.9
4,441,795	-		PP_3939	0.43	-0.1
4,441,798	+		PP_3939	0.43	-0.1
4,441,798	+		PP_3939	0.43	+0.0
4,441,798	+		PP_3939	0.43	-0.7
4,441,799	-		PP_3939	0.43	-1.0
4,441,835	-		PP_3939	0.46	-0.1
4,441,854	+		PP_3939	0.48	+1.5
4,441,855	-		PP_3939	0.48	+0.5
4,441,855	-		PP_3939	0.48	-0.7
4,441,869	+		PP_3939	0.49	+0.6
4,441,869	+		PP_3939	0.49	+0.7
4,441,870	-		PP_3939	0.49	-0.0
4,441,870	-		PP_3939	0.49	-0.2
4,441,870	-		PP_3939	0.49	-1.6
4,441,888	+		PP_3939	0.50	-1.5
4,441,935	+		PP_3939	0.54	-1.3
4,441,935	+		PP_3939	0.54	-2.6
4,441,936	-		PP_3939	0.54	+0.3
4,441,936	-		PP_3939	0.54	+0.1
4,442,040	+		PP_3939	0.62	+0.0
4,442,040	+		PP_3939	0.62	-0.4
4,442,040	+		PP_3939	0.62	-0.2
4,442,287	+		PP_3939	0.81	+0.3
4,442,288	-		PP_3939	0.81	-2.3
4,442,311	+		PP_3939	0.83	-0.7
4,442,389	-		PP_3939	0.89	+1.3
4,442,389	-		PP_3939	0.89	-1.7
4,442,473	+				+1.5
4,442,474	-				+0.6
4,442,474	-				-0.4
4,442,530	+				-1.2
4,442,530	+				+0.4
4,442,536	+				-1.2
4,442,536	+				-0.2
4,443,176	+		PP_3940	0.39	+0.3
4,443,225	+		PP_3940	0.42	+1.0
4,443,226	-		PP_3940	0.42	-0.3
4,443,351	+		PP_3940	0.52	-0.1
4,443,352	-		PP_3940	0.52	+0.9