Strain Fitness in Pseudomonas putida KT2440 around PP_3821

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
4,348,747	-				-1.7
4,348,763	-				-2.1
4,348,763	-				+1.5
4,349,107	+				+1.2
4,349,108	-				-1.1
4,349,108	-				+0.1
4,349,108	-				+0.0
4,349,108	-				-2.0
4,349,113	+				-0.4
4,349,113	+				-0.0
4,349,113	+				-0.7
4,349,113	+				-2.9
4,349,113	+				-1.9
4,349,131	+				+0.1
4,349,131	+				+0.5
4,349,131	+				+0.3
4,349,132	-				-0.1
4,349,134	+				+1.0
4,349,135	-				+0.1
4,349,135	-				+1.3
4,349,135	-				+0.8
4,349,167	+				-2.6
4,349,168	-				-3.7
4,349,210	+		PP_3821	0.12	-2.3
4,349,211	-		PP_3821	0.12	-3.9
4,349,211	-		PP_3821	0.12	-2.4
4,349,211	-		PP_3821	0.12	-4.0
4,349,211	-		PP_3821	0.12	-4.5
4,349,211	-		PP_3821	0.12	-2.4
4,349,212	+		PP_3821	0.12	-4.0
4,349,212	+		PP_3821	0.12	-2.9
4,349,212	+		PP_3821	0.12	-4.2
4,349,213	-		PP_3821	0.12	-2.1
4,349,213	-		PP_3821	0.12	-3.5
4,349,213	-		PP_3821	0.12	-1.8
4,349,265	+		PP_3821	0.19	-2.3
4,349,266	-		PP_3821	0.19	-3.8
4,349,266	-		PP_3821	0.19	-3.1
4,349,266	-		PP_3821	0.19	-2.8
4,349,329	+		PP_3821	0.26	-3.1
4,349,329	+		PP_3821	0.26	-4.3
4,349,440	+		PP_3821	0.39	-5.5
4,349,440	+		PP_3821	0.39	-2.3
4,349,440	+		PP_3821	0.39	-3.1
4,349,441	-		PP_3821	0.40	-3.7
4,349,441	-		PP_3821	0.40	-2.0
4,349,441	-		PP_3821	0.40	-1.9
4,349,441	-		PP_3821	0.40	-3.2
4,349,441	-		PP_3821	0.40	-2.3
4,349,495	-		PP_3821	0.46	-0.7
4,349,638	+		PP_3821	0.63	-4.0
4,349,653	+		PP_3821	0.65	-3.5
4,349,654	-		PP_3821	0.65	-3.8
4,349,688	-		PP_3821	0.69	-4.8
4,349,699	-		PP_3821	0.70	-4.2
4,349,699	-		PP_3821	0.70	-4.3
4,349,740	+		PP_3821	0.75	-3.7
4,349,740	+		PP_3821	0.75	-2.3
4,349,740	+		PP_3821	0.75	+0.5
4,349,741	-		PP_3821	0.75	-3.9
4,349,837	-		PP_3821	0.87	-3.2
4,349,948	+				-2.2
4,349,948	+				-3.8
4,349,948	+				-0.5
4,349,948	+				-2.6
4,349,948	+				-4.2
4,349,948	+				-2.9
4,349,948	+				-3.7
4,349,948	+				-3.5
4,349,948	+				-2.6
4,349,948	+				-1.0
4,349,948	+				-2.9
4,349,949	-				-1.7
4,349,949	-				-0.3
4,349,949	-				-4.4
4,349,949	-				+0.7
4,349,949	-				-0.5
4,349,950	+				-2.8
4,349,950	+				-4.8
4,349,950	+				-2.5
4,349,950	+				-2.3
4,349,950	+				-1.2
4,349,950	+				+1.8
4,349,950	+				-1.5
4,349,950	+				-4.5
4,349,951	-				-2.0
4,349,951	-				-0.5
4,349,951	-				-0.4
4,349,951	-				-0.8
4,349,951	-				-1.2
4,349,951	-				-1.9
4,349,951	-				-1.5
4,349,958	+				-2.9
4,349,958	+				-3.0
4,349,959	-				-1.4
4,349,969	-				+0.5
4,349,969	-				-0.4
4,349,993	+				-0.2
4,349,993	+				-0.2
4,349,994	-				-1.1
4,350,013	+				-1.2
4,350,013	+				-0.1
4,350,013	+				-0.3
4,350,013	+				-0.8
4,350,013	+				-1.3
4,350,013	+				-2.7
4,350,014	-				-2.5
4,350,014	-				-0.5
4,350,045	+				+0.3
4,350,045	+				-1.4
4,350,045	+				-1.9
4,350,046	-				-0.6
4,350,046	-				-0.5
4,350,046	-				+3.2
4,350,046	-				+0.7
4,350,051	+				+0.3
4,350,052	-				+0.8
4,350,061	+				+0.3
4,350,061	+				+0.1
4,350,061	+				-1.2
4,350,061	+				-0.7
4,350,061	+				+0.8
4,350,062	-				+0.3
4,350,066	-				+1.2
4,350,081	+				+0.1
4,350,081	+				-1.0
4,350,086	-				-0.5
4,350,086	-				+0.0
4,350,096	+				-1.1
4,350,097	-				+0.4
4,350,097	-				-1.5
4,350,097	-				+1.8
4,350,097	-				-1.6
4,350,097	-				+2.6
4,350,191	-				-0.7
4,350,229	+				-0.6
4,350,229	+				-0.4
4,350,229	+				-0.2
4,350,230	-				+2.0
4,350,234	+				+0.0
4,350,234	+				-0.4
4,350,234	+				-0.3
4,350,293	+		PP_3822	0.12	-0.4
4,350,293	+		PP_3822	0.12	-1.8
4,350,397	-		PP_3822	0.23	+0.6
4,350,397	-		PP_3822	0.23	-1.2
4,350,418	+		PP_3822	0.25	+1.0
4,350,450	+		PP_3822	0.29	+0.2
4,350,450	+		PP_3822	0.29	+0.8
4,350,451	-		PP_3822	0.29	+0.6
4,350,479	+		PP_3822	0.32	-1.1
4,350,479	+		PP_3822	0.32	+0.5
4,350,479	+				+0.5
4,350,479	+		PP_3822	0.32	-0.6
4,350,479	+		PP_3822	0.32	+0.1
4,350,479	+		PP_3822	0.32	-2.5
4,350,479	+		PP_3822	0.32	+0.6
4,350,479	+		PP_3822	0.32	+0.3
4,350,480	-		PP_3822	0.32	+0.6
4,350,480	-		PP_3822	0.32	-1.7
4,350,480	-		PP_3822	0.32	+0.3
4,350,480	-		PP_3822	0.32	-0.6
4,350,480	-		PP_3822	0.32	-1.3
4,350,480	-		PP_3822	0.32	+0.5
4,350,480	-		PP_3822	0.32	-2.1
4,350,483	+		PP_3822	0.33	-1.9
4,350,483	+		PP_3822	0.33	-1.7
4,350,483	+		PP_3822	0.33	-0.4
4,350,484	-		PP_3822	0.33	+0.2
4,350,484	-		PP_3822	0.33	-0.5
4,350,655	-		PP_3822	0.51	+0.7
4,350,655	-		PP_3822	0.51	+0.8
4,350,660	+		PP_3822	0.52	-1.3
4,350,660	+		PP_3822	0.52	+0.4
4,350,661	-		PP_3822	0.52	+1.3
4,350,661	-		PP_3822	0.52	+0.3
4,350,789	+		PP_3822	0.66	+0.3
4,350,799	-		PP_3822	0.67	-1.0
4,350,853	+		PP_3822	0.73	+0.7
4,350,854	-		PP_3822	0.73	+0.5
4,350,854	-		PP_3822	0.73	+0.3