Strain Fitness in Pseudomonas putida KT2440 around PP_3820

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
4,346,319	+		PP_3819	0.43	-1.5
4,346,506	-		PP_3819	0.57	-3.2
4,346,563	+		PP_3819	0.61	+1.5
4,346,563	+		PP_3819	0.61	-3.3
4,346,564	-		PP_3819	0.61	-1.4
4,346,565	+		PP_3819	0.61	-3.3
4,346,566	-		PP_3819	0.61	-0.7
4,346,566	-		PP_3819	0.61	-0.3
4,346,566	-		PP_3819	0.61	-3.1
4,346,566	-		PP_3819	0.61	-1.4
4,346,566	-		PP_3819	0.61	+0.2
4,346,566	-		PP_3819	0.61	-2.3
4,346,611	-		PP_3819	0.65	-3.5
4,346,692	+		PP_3819	0.71	-2.2
4,346,692	+		PP_3819	0.71	-2.4
4,346,692	+		PP_3819	0.71	-0.9
4,346,693	-		PP_3819	0.71	-0.1
4,346,706	+		PP_3819	0.72	-1.8
4,346,707	-		PP_3819	0.72	-1.7
4,346,794	+				-0.1
4,346,799	+		PP_3819	0.78	-1.1
4,346,799	+		PP_3819	0.78	-0.8
4,346,800	-		PP_3819	0.78	-1.8
4,346,800	-		PP_3819	0.78	-3.1
4,346,800	-		PP_3819	0.78	-2.2
4,346,800	-				-2.2
4,346,800	-		PP_3819	0.78	-0.9
4,346,800	-		PP_3819	0.78	-0.3
4,346,928	+		PP_3819	0.88	-3.0
4,346,930	+		PP_3819	0.88	-2.3
4,346,930	+		PP_3819	0.88	-1.3
4,346,930	+		PP_3819	0.88	-1.5
4,346,931	-		PP_3819	0.88	-2.4
4,346,931	-		PP_3819	0.88	-2.1
4,347,094	-				+0.9
4,347,094	-				-4.1
4,347,094	-				-2.5
4,347,094	-				+0.9
4,347,094	-				-1.2
4,347,123	-				-1.5
4,348,747	-				-1.7
4,348,763	-				-2.1
4,348,763	-				+1.5
4,349,107	+				+1.2
4,349,108	-				-1.1
4,349,108	-				+0.1
4,349,108	-				+0.0
4,349,108	-				-2.0
4,349,113	+				-0.4
4,349,113	+				-0.0
4,349,113	+				-0.7
4,349,113	+				-2.9
4,349,113	+				-1.9
4,349,131	+				+0.1
4,349,131	+				+0.5
4,349,131	+				+0.3
4,349,132	-				-0.1
4,349,134	+				+1.0
4,349,135	-				+0.1
4,349,135	-				+1.3
4,349,135	-				+0.8
4,349,167	+				-2.6
4,349,168	-				-3.7
4,349,210	+		PP_3821	0.12	-2.3
4,349,211	-		PP_3821	0.12	-3.9
4,349,211	-		PP_3821	0.12	-2.4
4,349,211	-		PP_3821	0.12	-4.0
4,349,211	-		PP_3821	0.12	-4.5
4,349,211	-		PP_3821	0.12	-2.4
4,349,212	+		PP_3821	0.12	-4.0
4,349,212	+		PP_3821	0.12	-2.9
4,349,212	+		PP_3821	0.12	-4.2
4,349,213	-		PP_3821	0.12	-2.1
4,349,213	-		PP_3821	0.12	-3.5
4,349,213	-		PP_3821	0.12	-1.8
4,349,265	+		PP_3821	0.19	-2.3
4,349,266	-		PP_3821	0.19	-3.8
4,349,266	-		PP_3821	0.19	-3.1
4,349,266	-		PP_3821	0.19	-2.8
4,349,329	+		PP_3821	0.26	-3.1
4,349,329	+		PP_3821	0.26	-4.3
4,349,440	+		PP_3821	0.39	-5.5
4,349,440	+		PP_3821	0.39	-2.3
4,349,440	+		PP_3821	0.39	-3.1
4,349,441	-		PP_3821	0.40	-3.7
4,349,441	-		PP_3821	0.40	-2.0
4,349,441	-		PP_3821	0.40	-1.9
4,349,441	-		PP_3821	0.40	-3.2
4,349,441	-		PP_3821	0.40	-2.3
4,349,495	-		PP_3821	0.46	-0.7