Strain Fitness in Pseudomonas putida KT2440 around PP_3676

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
4,174,355	-				-3.6
4,174,359	-				-1.2
4,174,359	-				-0.6
4,174,600	+				-1.9
4,174,601	-				-1.0
4,174,601	-				+1.2
4,174,601	-				-0.0
4,174,602	+				+0.2
4,174,602	+				-0.7
4,174,603	-				-1.8
4,174,686	+				-0.2
4,174,826	+				-1.3
4,174,937	-				+0.8
4,174,982	-				-0.1
4,175,046	-				+0.0
4,175,302	-				+1.1
4,175,572	-		PP_3676	0.12	-2.3
4,175,641	-		PP_3676	0.15	-0.2
4,175,720	+		PP_3676	0.19	-0.1
4,175,721	-		PP_3676	0.19	+1.3
4,175,721	-				+0.2
4,175,721	-		PP_3676	0.19	+0.2
4,175,775	-		PP_3676	0.22	+0.9
4,175,881	+		PP_3676	0.27	-2.3
4,175,964	+		PP_3676	0.30	-1.4
4,176,003	-		PP_3676	0.32	-1.9
4,176,524	+		PP_3676	0.57	-0.2
4,176,525	-		PP_3676	0.57	-1.1
4,176,679	-		PP_3676	0.64	-0.3
4,176,684	-		PP_3676	0.65	-1.5
4,176,825	+		PP_3676	0.71	-1.1
4,176,826	-		PP_3676	0.71	-2.1
4,176,969	+		PP_3676	0.78	-1.3
4,177,054	-		PP_3676	0.82	-0.7
4,177,160	-		PP_3676	0.87	+0.4
4,177,179	-		PP_3676	0.88	+0.0
4,177,477	-				-0.2
4,177,598	-				-0.4
4,177,770	-		PP_3677	0.16	-0.1
4,177,874	-		PP_3677	0.20	-0.2
4,178,107	+		PP_3677	0.31	-0.1
4,178,108	-		PP_3677	0.31	+1.5
4,178,151	-		PP_3677	0.33	+0.9
4,178,198	+		PP_3677	0.35	+1.6
4,178,252	+		PP_3677	0.38	-1.8
4,178,253	-		PP_3677	0.38	-0.7
4,178,306	+		PP_3677	0.40	-2.1
4,178,309	-		PP_3677	0.40	-0.5
4,178,309	-		PP_3677	0.40	-1.8
4,178,309	-		PP_3677	0.40	-0.7
4,178,376	-		PP_3677	0.43	-0.8