Experiment: 3-methyl-1-butanol 0.1 vol% (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3636 and PP_3637 overlap by 14 nucleotides PP_3637 and PP_3638 overlap by 4 nucleotides PP_3638 and PP_3639 are separated by 99 nucleotides PP_3639 and PP_3640 are separated by 3 nucleotides
PP_3636: PP_3636 - putative Sulfonate ABC transporter, periplasmic sulfonate-binding protein, at 4,131,955 to 4,133,160
_3636
PP_3637: PP_3637 - putative Sulfonate ABC transporter, ATP-binding protein, at 4,133,147 to 4,133,968
_3637
PP_3638: PP_3638 - putative Acyl-CoA dehydrogenase, at 4,133,965 to 4,135,029
_3638
PP_3639: PP_3639 - Alkylhydroperoxidase AhpD domain protein, at 4,135,129 to 4,135,788
_3639
PP_3640: PP_3640 - Transcriptional regulator, AraC family, at 4,135,792 to 4,136,712
_3640
Position (kb) 4133
4134
4135
4136 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4132.971 kb on + strand, within PP_3636 at 4132.972 kb on - strand, within PP_3636 at 4132.972 kb on - strand, within PP_3636 at 4132.972 kb on - strand, within PP_3636 at 4133.192 kb on - strand at 4133.192 kb on - strand at 4133.333 kb on + strand, within PP_3637 at 4134.086 kb on + strand, within PP_3638 at 4134.087 kb on - strand, within PP_3638 at 4134.087 kb on - strand, within PP_3638 at 4134.087 kb on - strand, within PP_3638 at 4134.087 kb on - strand, within PP_3638 at 4134.087 kb on - strand, within PP_3638 at 4134.121 kb on + strand, within PP_3638 at 4134.370 kb on + strand, within PP_3638 at 4134.481 kb on + strand, within PP_3638 at 4134.481 kb on + strand, within PP_3638 at 4134.481 kb on + strand, within PP_3638 at 4134.482 kb on - strand, within PP_3638 at 4134.588 kb on + strand, within PP_3638 at 4134.589 kb on - strand, within PP_3638 at 4134.589 kb on - strand, within PP_3638 at 4134.785 kb on + strand, within PP_3638 at 4134.786 kb on - strand, within PP_3638 at 4134.949 kb on + strand at 4134.950 kb on - strand at 4135.093 kb on + strand at 4135.094 kb on - strand at 4135.094 kb on - strand at 4135.106 kb on + strand at 4135.106 kb on + strand at 4135.107 kb on - strand at 4135.107 kb on - strand at 4135.116 kb on + strand at 4135.116 kb on + strand at 4135.117 kb on - strand at 4135.117 kb on - strand at 4135.117 kb on - strand at 4135.131 kb on - strand at 4135.223 kb on - strand, within PP_3639 at 4135.284 kb on - strand, within PP_3639 at 4135.284 kb on - strand, within PP_3639 at 4135.548 kb on - strand, within PP_3639 at 4135.548 kb on - strand, within PP_3639 at 4135.548 kb on - strand, within PP_3639 at 4135.670 kb on - strand, within PP_3639 at 4135.670 kb on - strand, within PP_3639 at 4135.670 kb on - strand, within PP_3639 at 4135.670 kb on - strand, within PP_3639 at 4135.718 kb on - strand, within PP_3639 at 4135.718 kb on - strand, within PP_3639 at 4135.734 kb on - strand at 4135.734 kb on - strand at 4135.740 kb on + strand at 4135.740 kb on + strand at 4135.741 kb on - strand at 4135.789 kb on + strand at 4135.789 kb on + strand at 4135.789 kb on + strand at 4135.790 kb on - strand at 4135.790 kb on - strand at 4135.790 kb on - strand at 4135.790 kb on - strand at 4135.790 kb on - strand at 4135.790 kb on - strand at 4135.826 kb on + strand at 4135.826 kb on + strand at 4135.827 kb on - strand at 4135.827 kb on - strand at 4135.870 kb on + strand at 4135.871 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C) remove 4,132,971 + PP_3636 0.84 +0.5 4,132,972 - PP_3636 0.84 +0.9 4,132,972 - PP_3636 0.84 -3.1 4,132,972 - PP_3636 0.84 +0.3 4,133,192 - -0.6 4,133,192 - +0.8 4,133,333 + PP_3637 0.23 -0.0 4,134,086 + PP_3638 0.11 +0.1 4,134,087 - PP_3638 0.11 -0.2 4,134,087 - PP_3638 0.11 -0.7 4,134,087 - PP_3638 0.11 +0.2 4,134,087 - PP_3638 0.11 +3.5 4,134,087 - PP_3638 0.11 +0.4 4,134,121 + PP_3638 0.15 +1.6 4,134,370 + PP_3638 0.38 +0.8 4,134,481 + PP_3638 0.48 -0.6 4,134,481 + PP_3638 0.48 -0.7 4,134,481 + PP_3638 0.48 -1.0 4,134,482 - PP_3638 0.49 -2.3 4,134,588 + PP_3638 0.58 -0.0 4,134,589 - PP_3638 0.59 +1.6 4,134,589 - PP_3638 0.59 -1.2 4,134,785 + PP_3638 0.77 -0.5 4,134,786 - PP_3638 0.77 +1.2 4,134,949 + -1.8 4,134,950 - +1.5 4,135,093 + +0.1 4,135,094 - -0.2 4,135,094 - +0.5 4,135,106 + -0.8 4,135,106 + +1.2 4,135,107 - -0.9 4,135,107 - +1.7 4,135,116 + +0.8 4,135,116 + +0.5 4,135,117 - +1.9 4,135,117 - -0.0 4,135,117 - +0.6 4,135,131 - +0.2 4,135,223 - PP_3639 0.14 +1.8 4,135,284 - PP_3639 0.23 -1.1 4,135,284 - PP_3639 0.23 +1.3 4,135,548 - PP_3639 0.63 -0.1 4,135,548 - PP_3639 0.63 -0.3 4,135,548 - PP_3639 0.63 -1.4 4,135,670 - PP_3639 0.82 +0.9 4,135,670 - PP_3639 0.82 +0.3 4,135,670 - PP_3639 0.82 +0.5 4,135,670 - PP_3639 0.82 -0.6 4,135,718 - PP_3639 0.89 -1.2 4,135,718 - PP_3639 0.89 +1.0 4,135,734 - -0.2 4,135,734 - +0.0 4,135,740 + +0.8 4,135,740 + +0.5 4,135,741 - +0.8 4,135,789 + +0.6 4,135,789 + +0.5 4,135,789 + +0.4 4,135,790 - -0.8 4,135,790 - +0.6 4,135,790 - -0.4 4,135,790 - +0.6 4,135,790 - -0.0 4,135,790 - -1.4 4,135,826 + +0.7 4,135,826 + +0.4 4,135,827 - +1.1 4,135,827 - +0.5 4,135,870 + +1.0 4,135,871 - +1.2
Or see this region's nucleotide sequence