Strain Fitness in Pseudomonas putida KT2440 around PP_3545

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
4,016,576	+		PP_3544	0.34	+0.1
4,016,577	-				-0.5
4,016,708	+		PP_3544	0.43	+0.0
4,016,708	+		PP_3544	0.43	-0.2
4,016,708	+		PP_3544	0.43	+1.1
4,016,708	+		PP_3544	0.43	-1.0
4,016,708	+		PP_3544	0.43	-1.6
4,016,708	+		PP_3544	0.43	-0.8
4,016,709	-		PP_3544	0.43	-0.5
4,016,709	-		PP_3544	0.43	+0.1
4,016,709	-		PP_3544	0.43	-0.7
4,016,709	-		PP_3544	0.43	+0.2
4,016,709	-		PP_3544	0.43	-3.0
4,016,709	-		PP_3544	0.43	-1.1
4,016,709	-		PP_3544	0.43	-0.0
4,016,709	-		PP_3544	0.43	-0.7
4,016,961	-		PP_3544	0.61	-1.6
4,016,961	-		PP_3544	0.61	+0.7
4,016,961	-		PP_3544	0.61	-0.2
4,016,963	+		PP_3544	0.61	-0.5
4,016,963	+		PP_3544	0.61	-0.7
4,017,164	+		PP_3544	0.76	+0.3
4,017,182	+		PP_3544	0.77	+1.1
4,017,299	+		PP_3544	0.85	+1.1
4,017,438	-				+1.1
4,017,510	-				+0.2
4,017,534	+				-1.5
4,017,535	-				-0.7
4,017,535	-				-0.5
4,017,535	-				-0.4
4,017,535	-				+0.3
4,017,535	-				+0.0
4,017,535	-				+0.4
4,017,577	+				+0.4
4,017,577	+				+0.8
4,017,577	+				+0.8
4,017,577	+				+0.8
4,017,578	-				+0.4
4,017,578	-				-0.8
4,017,578	-				+0.7
4,017,578	-				-1.3
4,017,578	-				-0.2
4,017,806	+		PP_3545	0.14	-1.6
4,017,806	+		PP_3545	0.14	-0.1
4,017,806	+		PP_3545	0.14	-0.4
4,017,806	+		PP_3545	0.14	+0.9
4,017,807	-		PP_3545	0.15	-0.6
4,017,807	-		PP_3545	0.15	+0.2
4,017,810	+		PP_3545	0.15	+3.6
4,017,874	-		PP_3545	0.19	-0.7
4,018,361	+		PP_3545	0.48	-0.2
4,018,370	+		PP_3545	0.48	-0.6
4,018,402	+		PP_3545	0.50	+1.1
4,018,685	+		PP_3545	0.67	-0.1
4,018,760	+		PP_3545	0.72	+0.6
4,018,760	+		PP_3545	0.72	-0.8
4,018,761	-		PP_3545	0.72	-0.2
4,018,905	+		PP_3545	0.81	-1.0
4,018,905	+		PP_3545	0.81	-1.7
4,018,905	+		PP_3545	0.81	+0.6
4,018,905	+		PP_3545	0.81	-2.1
4,018,906	-		PP_3545	0.81	-0.8
4,018,911	+		PP_3545	0.81	-0.4
4,018,912	-		PP_3545	0.81	-1.4
4,018,912	-		PP_3545	0.81	-2.6
4,018,958	+		PP_3545	0.84	+1.0
4,018,958	+		PP_3545	0.84	-0.1
4,018,959	-		PP_3545	0.84	+0.4
4,018,959	-		PP_3545	0.84	-0.8
4,018,959	-		PP_3545	0.84	-3.1
4,018,959	-		PP_3545	0.84	+0.6
4,018,959	-		PP_3545	0.84	+0.7
4,018,959	-		PP_3545	0.84	+0.6
4,018,959	-		PP_3545	0.84	-1.1
4,018,959	-		PP_3545	0.84	-0.9
4,019,059	+				+0.6
4,019,059	+		PP_3545	0.90	-0.5
4,019,059	+		PP_3545	0.90	-0.7
4,019,060	-		PP_3545	0.90	+0.2
4,019,060	-		PP_3545	0.90	-2.5
4,019,060	-		PP_3545	0.90	-0.6
4,019,060	-		PP_3545	0.90	-1.2
4,019,060	-		PP_3545	0.90	-0.1
4,019,096	+				+1.4
4,019,097	-				+0.7
4,019,097	-				+0.2
4,019,113	+				-0.3
4,019,114	-				+0.2
4,019,256	+				+0.6
4,019,401	+				+0.6
4,019,482	+				-1.7
4,019,482	+				+0.4
4,019,482	+				+0.4
4,019,483	-				-1.9
4,019,483	-				+0.7
4,019,483	-				+0.0
4,019,483	-				-1.1
4,019,509	+		PP_3546	0.11	+0.3
4,019,509	+		PP_3546	0.11	+0.4
4,019,510	-		PP_3546	0.11	+0.7
4,019,687	+		PP_3546	0.19	-0.1
4,019,688	-		PP_3546	0.19	-0.1
4,019,711	+		PP_3546	0.20	+0.1
4,019,711	+		PP_3546	0.20	+0.3
4,019,844	+		PP_3546	0.27	+0.6
4,019,845	-		PP_3546	0.27	+0.1
4,019,927	+		PP_3546	0.31	-0.3
4,019,927	+		PP_3546	0.31	+0.8
4,019,929	+		PP_3546	0.31	+0.4
4,019,956	+		PP_3546	0.32	+0.4
4,019,957	-		PP_3546	0.32	+0.9
4,019,957	-		PP_3546	0.32	+0.5
4,020,085	+		PP_3546	0.38	-1.0
4,020,086	-		PP_3546	0.39	+0.2
4,020,128	+		PP_3546	0.41	-1.3
4,020,151	+		PP_3546	0.42	-0.1
4,020,151	+		PP_3546	0.42	+0.4