Strain Fitness in Pseudomonas putida KT2440 around PP_3528

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
3,998,366	+				+0.8
3,998,430	+		PP_3527	0.10	-0.4
3,998,431	-		PP_3527	0.10	+0.1
3,998,431	-		PP_3527	0.10	+0.9
3,998,431	-		PP_3527	0.10	-0.9
3,998,494	+		PP_3527	0.19	-0.4
3,998,495	-		PP_3527	0.20	+0.5
3,998,495	-		PP_3527	0.20	+2.1
3,998,644	+		PP_3527	0.41	+0.1
3,998,645	-		PP_3527	0.42	-0.9
3,998,654	-		PP_3527	0.43	+0.3
3,998,654	-		PP_3527	0.43	+0.2
3,998,801	-		PP_3527	0.64	+0.0
3,998,824	+				+0.1
3,998,824	+		PP_3527	0.68	+0.5
3,998,824	+		PP_3527	0.68	+0.1
3,998,825	-		PP_3527	0.68	-1.3
3,998,848	+		PP_3527	0.71	+1.6
3,998,849	-		PP_3527	0.71	-2.7
3,998,851	+		PP_3527	0.72	-1.9
3,998,852	-		PP_3527	0.72	+0.1
3,998,852	-		PP_3527	0.72	+0.9
3,998,852	-		PP_3527	0.72	-0.8
3,998,854	+		PP_3527	0.72	-0.8
3,998,854	+		PP_3527	0.72	-0.3
3,998,855	-		PP_3527	0.72	+1.2
3,998,855	-		PP_3527	0.72	-0.4
3,998,855	-		PP_3527	0.72	-0.4
3,998,855	-		PP_3527	0.72	-0.1
3,998,855	-		PP_3527	0.72	-0.7
3,998,855	-		PP_3527	0.72	-1.4
3,998,855	-		PP_3527	0.72	+0.1
3,999,031	-				+0.0
3,999,045	-				-0.9
3,999,064	-				-1.2
3,999,064	-				-0.8
3,999,185	-				+0.1
3,999,185	-				-0.3
3,999,199	-				+0.5
3,999,277	+				-1.0
3,999,371	+				+1.0
3,999,560	+		PP_3528	0.25	-0.6
3,999,561	-		PP_3528	0.25	-0.6
3,999,674	-		PP_3528	0.36	-1.1
3,999,778	+		PP_3528	0.47	+0.1
3,999,792	-		PP_3528	0.48	-0.8
3,999,817	+		PP_3528	0.51	-1.4
3,999,818	-		PP_3528	0.51	-0.5
3,999,828	+		PP_3528	0.52	-0.1
3,999,838	+		PP_3528	0.53	-1.2
3,999,991	+		PP_3528	0.68	-1.9
3,999,991	+		PP_3528	0.68	-0.1
3,999,991	+		PP_3528	0.68	+0.2
3,999,992	-		PP_3528	0.68	-0.2
3,999,992	-		PP_3528	0.68	-0.2
3,999,992	-		PP_3528	0.68	+0.5
3,999,992	-		PP_3528	0.68	-0.3
3,999,992	-		PP_3528	0.68	-0.7
3,999,992	-		PP_3528	0.68	-0.0
4,000,168	+		PP_3528	0.86	-0.0
4,000,183	-		PP_3528	0.88	-1.2
4,000,259	+				+1.3
4,000,260	-				-1.0
4,000,260	-				+0.3
4,000,430	+				-0.2
4,000,431	-				+2.4
4,000,431	-				+0.7
4,000,505	+		PP_3529	0.14	+0.2
4,000,505	+		PP_3529	0.14	-1.6
4,000,505	+		PP_3529	0.14	+0.6
4,000,506	-		PP_3529	0.14	+0.9
4,000,506	-		PP_3529	0.14	-1.3
4,000,506	-		PP_3529	0.14	-0.1
4,000,506	-		PP_3529	0.14	-0.8
4,000,515	-		PP_3529	0.14	-0.0
4,000,643	+		PP_3529	0.24	-0.4
4,000,644	-		PP_3529	0.24	+0.9
4,000,644	-		PP_3529	0.24	-1.3
4,000,644	-		PP_3529	0.24	-2.3
4,000,730	+		PP_3529	0.30	+0.1
4,000,790	+		PP_3529	0.35	-3.2
4,000,808	+		PP_3529	0.36	+0.5
4,000,808	+		PP_3529	0.36	+0.5
4,000,809	-		PP_3529	0.36	-0.8
4,000,809	-		PP_3529	0.36	-1.5
4,000,823	+		PP_3529	0.37	+0.7
4,000,823	+		PP_3529	0.37	-1.2
4,000,823	+		PP_3529	0.37	+0.7
4,000,824	-		PP_3529	0.37	-1.0
4,000,824	-		PP_3529	0.37	+0.6
4,000,886	+		PP_3529	0.42	-1.5
4,000,887	-		PP_3529	0.42	+1.6
4,000,887	-		PP_3529	0.42	+0.3
4,000,887	-		PP_3529	0.42	+0.1
4,000,888	+		PP_3529	0.42	-2.5
4,001,207	-				+1.4
4,001,214	-		PP_3529	0.66	+1.4
4,001,214	-		PP_3529	0.66	+1.0
4,001,222	+		PP_3529	0.66	-0.2