Strain Fitness in Pseudomonas putida KT2440 around PP_3505

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
3,974,324	-		PP_3503	0.89	+0.1
3,974,364	+				-1.7
3,974,364	+				-0.4
3,974,365	-				-1.5
3,974,365	-				-1.6
3,974,405	-				-0.3
3,974,541	+				+1.2
3,974,541	+				+1.1
3,974,694	+				-2.5
3,974,694	+				-0.7
3,974,717	+				-0.8
3,974,717	+				+3.0
3,974,718	-				-0.3
3,974,723	+				-1.2
3,974,799	-				+0.9
3,974,799	-				-1.4
3,974,884	-		PP_3504	0.27	-1.6
3,974,905	+		PP_3504	0.34	+0.1
3,974,905	+		PP_3504	0.34	+1.1
3,974,981	+		PP_3504	0.63	+1.9
3,974,981	+		PP_3504	0.63	-0.5
3,974,981	+		PP_3504	0.63	-2.4
3,974,982	-		PP_3504	0.63	+1.4
3,974,982	-		PP_3504	0.63	+1.9
3,974,982	-		PP_3504	0.63	+0.1
3,975,077	+				+0.3
3,975,078	-				-0.4
3,975,078	-				+1.2
3,975,121	+				+1.1
3,975,121	+				+0.2
3,975,121	+				-0.3
3,975,220	+				-2.5
3,975,221	-				-4.3
3,975,221	-				-0.9
3,975,324	-		PP_3505	0.23	-3.7
3,975,403	-		PP_3505	0.37	-3.5
3,975,568	+		PP_3505	0.65	-2.8
3,976,021	+		PP_3506	0.16	-3.9
3,976,078	+		PP_3506	0.22	-1.5
3,976,078	+		PP_3506	0.22	-3.9
3,976,165	-		PP_3506	0.31	-1.5
3,976,440	-		PP_3506	0.58	-3.8
3,976,560	+		PP_3506	0.70	-4.4