Strain Fitness in Pseudomonas putida KT2440 around PP_3416

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
3,866,209	+		PP_3415	0.34	+1.4
3,866,209	+		PP_3415	0.34	+2.0
3,866,210	-		PP_3415	0.35	+1.7
3,866,516	+		PP_3415	0.65	+1.4
3,866,517	-				+3.0
3,866,552	+		PP_3415	0.68	+1.5
3,866,552	+		PP_3415	0.68	+3.0
3,866,559	-		PP_3415	0.69	-2.1
3,866,559	-		PP_3415	0.69	+0.6
3,866,559	-		PP_3415	0.69	+2.3
3,866,714	+		PP_3415	0.84	+0.8
3,866,714	+		PP_3415	0.84	+1.3
3,866,853	+				-0.2
3,866,854	-				-0.3
3,866,854	-				+1.8
3,866,854	-				+3.1
3,866,892	+				+2.2
3,866,921	+				+1.5
3,866,922	-				+0.5
3,866,953	+				+0.7
3,866,953	+				-2.1
3,866,953	+				+0.0
3,866,953	+				-0.4
3,866,954	-				-0.1
3,866,997	+				+0.4
3,866,998	-				+1.2
3,867,020	-				-0.4
3,867,020	-				-0.9
3,867,079	+				-0.2
3,867,079	+				+0.5
3,867,080	-				+0.3
3,867,584	-				-0.0
3,867,714	+				+0.4
3,867,715	-				+0.3
3,867,715	-				-0.5
3,867,750	-				-1.0
3,867,750	-				+1.4
3,867,783	-				+0.9
3,867,783	-				+1.3
3,867,928	+		PP_3417	0.14	-0.1
3,867,928	+		PP_3417	0.14	+0.3
3,868,287	+		PP_3417	0.41	+0.8
3,868,440	-		PP_3417	0.52	-1.7
3,868,440	-		PP_3417	0.52	-0.5
3,868,440	-		PP_3417	0.52	+0.4
3,868,453	+		PP_3417	0.53	-0.2
3,868,453	+		PP_3417	0.53	+0.4
3,868,453	+		PP_3417	0.53	-0.1
3,868,454	-		PP_3417	0.53	-1.8