Strain Fitness in Pseudomonas putida KT2440 around PP_3415

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
3,864,935	+		PP_3414	0.46	+0.5
3,864,935	+		PP_3414	0.46	+0.3
3,865,261	+		PP_3414	0.71	+0.5
3,865,261	+		PP_3414	0.71	-2.3
3,865,262	-		PP_3414	0.71	+0.1
3,865,262	-		PP_3414	0.71	+0.7
3,865,262	-		PP_3414	0.71	+1.6
3,865,301	+		PP_3414	0.74	+1.1
3,865,302	-		PP_3414	0.74	+0.5
3,865,302	-		PP_3414	0.74	+0.9
3,865,302	-		PP_3414	0.74	+0.3
3,865,302	-		PP_3414	0.74	+0.7
3,865,302	-		PP_3414	0.74	-3.1
3,865,302	-		PP_3414	0.74	+0.8
3,865,302	-		PP_3414	0.74	+0.5
3,865,341	+		PP_3414	0.77	-0.6
3,865,353	+		PP_3414	0.78	+1.3
3,865,512	+		PP_3414	0.90	+1.4
3,865,513	-				-0.2
3,865,513	-				+0.7
3,865,513	-				-0.4
3,865,515	+				+0.4
3,865,659	+				-1.3
3,865,660	-				+0.9
3,865,679	+				-0.7
3,865,679	+				-0.9
3,865,680	-				+0.6
3,865,680	-				+0.4
3,865,680	-				+0.7
3,865,680	-				-1.0
3,865,680	-				-0.2
3,865,680	-				-0.0
3,865,707	+				+0.7
3,865,707	+				+2.0
3,865,719	-				+0.7
3,866,007	+		PP_3415	0.15	-0.4
3,866,007	+		PP_3415	0.15	+0.9
3,866,007	+				+2.4
3,866,008	-		PP_3415	0.15	-3.7
3,866,209	+		PP_3415	0.34	+1.4
3,866,209	+		PP_3415	0.34	+2.0
3,866,210	-		PP_3415	0.35	+1.7
3,866,516	+		PP_3415	0.65	+1.4
3,866,517	-				+3.0
3,866,552	+		PP_3415	0.68	+1.5
3,866,552	+		PP_3415	0.68	+3.0
3,866,559	-		PP_3415	0.69	-2.1
3,866,559	-		PP_3415	0.69	+0.6
3,866,559	-		PP_3415	0.69	+2.3
3,866,714	+		PP_3415	0.84	+0.8
3,866,714	+		PP_3415	0.84	+1.3
3,866,853	+				-0.2
3,866,854	-				-0.3
3,866,854	-				+1.8
3,866,854	-				+3.1
3,866,892	+				+2.2
3,866,921	+				+1.5
3,866,922	-				+0.5
3,866,953	+				+0.7
3,866,953	+				-2.1
3,866,953	+				+0.0
3,866,953	+				-0.4
3,866,954	-				-0.1
3,866,997	+				+0.4
3,866,998	-				+1.2
3,867,020	-				-0.4
3,867,020	-				-0.9
3,867,079	+				-0.2
3,867,079	+				+0.5
3,867,080	-				+0.3
3,867,584	-				-0.0
3,867,714	+				+0.4
3,867,715	-				+0.3
3,867,715	-				-0.5
3,867,750	-				-1.0
3,867,750	-				+1.4
3,867,783	-				+0.9
3,867,783	-				+1.3