Strain Fitness in Pseudomonas putida KT2440 around PP_3358

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
3,797,109	-		PP_3357	0.39	-0.5
3,797,164	+		PP_3357	0.43	-1.4
3,797,165	-		PP_3357	0.43	-2.0
3,797,165	-		PP_3357	0.43	-1.2
3,797,704	+		PP_3357	0.80	-0.3
3,798,018	-				+0.6
3,798,018	-				-0.8
3,798,018	-				+2.1
3,798,079	+				-0.1
3,798,190	+		PP_3358	0.15	-1.0
3,798,391	+		PP_3358	0.39	+0.3
3,798,391	+		PP_3358	0.39	-0.8
3,798,391	+		PP_3358	0.39	+0.9
3,798,391	+		PP_3358	0.39	+0.2
3,798,391	+		PP_3358	0.39	-1.5
3,798,391	+		PP_3358	0.39	+1.3
3,798,391	+		PP_3358	0.39	+0.2
3,798,391	+		PP_3358	0.39	+0.6
3,798,391	+		PP_3358	0.39	+0.9
3,798,392	-		PP_3358	0.39	-0.4
3,798,392	-		PP_3358	0.39	-1.4
3,798,394	+		PP_3358	0.39	+0.8
3,798,395	-		PP_3358	0.39	+0.8
3,798,586	+		PP_3358	0.62	+1.4
3,798,587	-		PP_3358	0.62	-0.4
3,798,726	+		PP_3358	0.79	+0.3
3,798,889	+				+0.1
3,798,890	-				+0.2
3,798,890	-				-2.9
3,798,890	-				+0.8
3,799,056	+				-0.2
3,799,056	+				-1.4
3,799,070	-				-3.0
3,799,102	+				+0.8
3,799,102	+				+0.0
3,799,102	+				+2.1
3,799,115	-				-0.8
3,799,219	+		PP_3359	0.26	-0.6
3,799,219	+		PP_3359	0.26	+0.4
3,799,220	-		PP_3359	0.26	-1.5
3,799,662	-				+1.3
3,799,662	-				+0.3
3,799,844	+		PP_3360	0.16	-1.4