Strain Fitness in Pseudomonas putida KT2440 around PP_3283

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
3,716,940	-		PP_3282	0.43	-0.8
3,716,945	+		PP_3282	0.44	-0.3
3,716,945	+		PP_3282	0.44	+0.2
3,716,946	-		PP_3282	0.44	-1.9
3,716,946	-		PP_3282	0.44	+0.4
3,716,946	-		PP_3282	0.44	-0.2
3,717,047	-		PP_3282	0.50	-0.3
3,717,065	+		PP_3282	0.52	+0.2
3,717,065	+		PP_3282	0.52	+0.7
3,717,065	+		PP_3282	0.52	-0.3
3,717,065	+		PP_3282	0.52	-1.5
3,717,065	+		PP_3282	0.52	-1.2
3,717,066	-		PP_3282	0.52	-1.2
3,717,066	-		PP_3282	0.52	+0.7
3,717,066	-		PP_3282	0.52	-0.2
3,717,066	-		PP_3282	0.52	+0.5
3,717,184	+		PP_3282	0.59	+0.3
3,717,185	-		PP_3282	0.60	-0.8
3,717,198	-		PP_3282	0.60	+0.4
3,717,198	-				-0.3
3,717,238	-		PP_3282	0.63	-1.1
3,717,284	+		PP_3282	0.66	+0.5
3,717,285	-		PP_3282	0.66	-1.1
3,717,285	-		PP_3282	0.66	-2.2
3,717,372	+		PP_3282	0.72	+0.1
3,717,435	+		PP_3282	0.76	+0.4
3,717,435	+		PP_3282	0.76	-0.3
3,717,436	-		PP_3282	0.76	+1.3
3,717,451	-		PP_3282	0.77	+0.2
3,717,451	-		PP_3282	0.77	+1.1
3,717,451	-		PP_3282	0.77	-0.1
3,717,451	-		PP_3282	0.77	-3.3
3,717,610	+		PP_3282	0.88	-0.9
3,717,692	+				-0.8
3,717,970	+		PP_3283	0.21	-1.3
3,717,971	-		PP_3283	0.21	+0.5
3,717,971	-		PP_3283	0.21	-2.6
3,718,148	+		PP_3283	0.44	-0.0
3,718,148	+		PP_3283	0.44	-2.0
3,718,281	+		PP_3283	0.61	+1.0
3,718,281	+		PP_3283	0.61	-1.3
3,718,281	+		PP_3283	0.61	+1.9
3,718,327	+		PP_3283	0.66	+1.5
3,718,328	-		PP_3283	0.67	+1.1
3,718,506	-		PP_3283	0.89	-0.8
3,718,506	-		PP_3283	0.89	-1.5
3,718,844	-		PP_3284	0.28	-1.5
3,718,960	+		PP_3284	0.43	-0.8
3,718,960	+		PP_3284	0.43	-1.8
3,718,961	-		PP_3284	0.43	-0.1
3,718,961	-		PP_3284	0.43	+0.0
3,719,149	+		PP_3284	0.67	+1.9
3,719,305	+		PP_3284	0.88	-0.3
3,719,388	+				-2.4
3,719,388	+				+1.3
3,719,388	+				-0.4
3,719,388	+				+1.5
3,719,389	-				-0.0
3,719,390	+				+0.5
3,719,391	-				-2.2
3,719,472	-				-4.1
3,719,472	-				-2.2
3,719,472	-				+0.6
3,719,503	+				+1.7
3,719,503	+				+0.5
3,719,504	-				-2.3
3,719,569	-				-0.7