Strain Fitness in Pseudomonas putida KT2440 around PP_3230

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
3,665,399	+		PP_3229	0.32	-0.9
3,665,525	+		PP_3229	0.45	+0.3
3,665,525	+		PP_3229	0.45	-3.9
3,665,526	-		PP_3229	0.45	-0.5
3,665,526	-		PP_3229	0.45	+1.2
3,665,526	-		PP_3229	0.45	-0.5
3,665,526	-		PP_3229	0.45	-1.0
3,665,526	-		PP_3229	0.45	-1.8
3,665,585	+		PP_3229	0.51	+0.2
3,665,585	+		PP_3229	0.51	+0.8
3,665,657	+		PP_3229	0.59	-0.8
3,665,657	+		PP_3229	0.59	+0.1
3,665,658	-		PP_3229	0.59	+0.1
3,665,658	-		PP_3229	0.59	+0.6
3,665,723	+		PP_3229	0.66	+1.3
3,665,724	-		PP_3229	0.66	-1.8
3,665,732	+		PP_3229	0.67	-0.1
3,665,732	+		PP_3229	0.67	-0.8
3,665,732	+		PP_3229	0.67	+0.1
3,665,735	+		PP_3229	0.67	-1.1
3,665,736	-		PP_3229	0.67	+0.8
3,665,754	-		PP_3229	0.69	+0.6
3,665,754	-		PP_3229	0.69	+0.7
3,665,775	+		PP_3229	0.71	+0.0
3,665,775	+		PP_3229	0.71	+0.9
3,665,776	-		PP_3229	0.71	+0.5
3,665,776	-		PP_3229	0.71	+1.2
3,665,776	-		PP_3229	0.71	-0.1
3,665,790	-		PP_3229	0.73	-1.2
3,665,790	-		PP_3229	0.73	+0.7
3,665,870	-		PP_3229	0.81	-0.3
3,665,915	+		PP_3229	0.86	+1.4
3,665,916	-		PP_3229	0.86	-3.1
3,665,916	-		PP_3229	0.86	-0.3
3,665,978	+				+1.3
3,666,029	+				+0.9
3,666,030	-				-0.3
3,666,030	-				+1.2
3,666,040	+				+0.3
3,666,040	+				-0.2
3,666,041	-				-0.9
3,666,048	-				+0.3
3,666,048	-				-0.2
3,666,050	+				+1.1
3,666,050	+				+0.4
3,666,051	-				+0.4
3,666,051	-				+0.2
3,666,407	-				+0.7
3,666,506	+		PP_3230	0.20	-1.5
3,666,507	-		PP_3230	0.20	+0.7
3,666,507	-		PP_3230	0.20	-0.6
3,666,556	+		PP_3230	0.28	-0.4
3,666,556	+		PP_3230	0.28	-3.7
3,666,556	+		PP_3230	0.28	-0.7
3,666,640	-		PP_3230	0.40	-1.7
3,666,654	+		PP_3230	0.42	+0.4
3,666,896	+		PP_3230	0.77	-0.1
3,666,896	+		PP_3230	0.77	-0.0
3,666,896	+		PP_3230	0.77	+0.2
3,666,957	-		PP_3230	0.85	-1.5
3,667,139	+				+0.3
3,667,140	-				-0.7
3,667,140	-				-1.0
3,667,143	+				+2.0
3,667,143	+				-0.5
3,667,143	+				-0.1
3,667,143	+				-0.9
3,667,143	+				+0.0
3,667,143	+				-1.2
3,667,144	-				+0.3
3,667,170	+				+0.4
3,667,179	+				-1.4
3,667,180	-				+0.7
3,667,279	-				-0.6
3,667,452	+				+0.9
3,667,453	-				-0.7
3,667,483	-		PP_3231	0.12	-1.0
3,667,483	-		PP_3231	0.12	+0.3
3,667,509	-		PP_3231	0.14	-1.4
3,667,927	-		PP_3231	0.44	-0.4
3,667,929	+		PP_3231	0.45	+0.3
3,667,949	+		PP_3231	0.46	-1.3
3,667,949	+		PP_3231	0.46	+1.4