Strain Fitness in Pseudomonas putida KT2440 around PP_3184

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
3,609,308	-				-1.1
3,609,308	-				-0.6
3,609,312	+				+0.8
3,609,370	+		PP_3183	0.12	+0.4
3,609,371	-		PP_3183	0.12	-0.0
3,609,371	-		PP_3183	0.12	-3.4
3,609,371	-		PP_3183	0.12	-2.7
3,609,371	-		PP_3183	0.12	-1.6
3,609,670	+		PP_3183	0.43	-1.6
3,609,671	-		PP_3183	0.43	-0.3
3,609,798	+		PP_3183	0.56	+1.7
3,609,799	-		PP_3183	0.56	+1.7
3,609,799	-		PP_3183	0.56	+0.5
3,609,868	+		PP_3183	0.63	+0.1
3,609,869	-		PP_3183	0.63	+0.5
3,609,869	-		PP_3183	0.63	+0.5
3,609,919	+		PP_3183	0.68	-1.3
3,609,963	+		PP_3183	0.73	-0.6
3,609,964	-		PP_3183	0.73	+0.8
3,609,964	-		PP_3183	0.73	-0.1
3,610,112	-		PP_3183	0.88	+0.8
3,610,112	-		PP_3183	0.88	-0.7
3,610,295	+				-0.3
3,610,295	+				+0.2
3,610,295	+				-0.7
3,610,296	-				+1.2
3,610,296	-				+1.4
3,610,408	-				+0.6
3,610,408	-				-0.3
3,610,641	+		PP_3184	0.10	-0.6
3,610,656	-		PP_3184	0.11	-0.5
3,610,656	-		PP_3184	0.11	-3.3
3,610,656	-		PP_3184	0.11	-1.3
3,610,703	+		PP_3184	0.12	+0.3
3,610,703	+		PP_3184	0.12	+0.6
3,610,703	+		PP_3184	0.12	+1.0
3,610,704	-		PP_3184	0.12	-0.5
3,610,704	-		PP_3184	0.12	-0.5
3,610,934	-		PP_3184	0.19	+0.3
3,610,946	+		PP_3184	0.19	+0.3
3,610,947	-		PP_3184	0.19	-0.3
3,610,947	-		PP_3184	0.19	+0.8
3,610,947	-		PP_3184	0.19	-0.0
3,611,069	+		PP_3184	0.23	-0.3
3,611,069	+		PP_3184	0.23	+0.6
3,611,070	-		PP_3184	0.23	+1.7
3,611,070	-		PP_3184	0.23	-2.3
3,611,070	-		PP_3184	0.23	-2.9
3,611,070	-		PP_3184	0.23	-0.3
3,611,070	-		PP_3184	0.23	+1.0
3,611,144	+		PP_3184	0.25	-0.4
3,611,145	-		PP_3184	0.25	+0.4
3,611,344	-		PP_3184	0.31	+0.1
3,611,543	+		PP_3184	0.37	-0.3
3,611,543	+		PP_3184	0.37	-1.5
3,611,544	-		PP_3184	0.37	-1.3
3,611,544	-		PP_3184	0.37	-0.8
3,611,544	-		PP_3184	0.37	-1.5
3,611,579	+		PP_3184	0.38	+0.0
3,611,580	-		PP_3184	0.38	-0.4
3,611,704	-		PP_3184	0.42	-1.0
3,611,704	-		PP_3184	0.42	+0.2
3,611,753	+		PP_3184	0.43	+0.3
3,611,753	+		PP_3184	0.43	-2.6
3,611,754	-		PP_3184	0.43	+1.1
3,611,754	-		PP_3184	0.43	-0.1
3,611,913	+		PP_3184	0.48	-0.7
3,611,914	-		PP_3184	0.48	-0.9
3,611,914	-		PP_3184	0.48	+0.5
3,611,954	+		PP_3184	0.49	+0.6
3,612,102	-		PP_3184	0.53	+0.1
3,612,216	-		PP_3184	0.57	+0.3
3,612,216	-		PP_3184	0.57	+1.9
3,612,308	+		PP_3184	0.59	-0.3
3,612,309	-		PP_3184	0.60	-0.9
3,612,311	+		PP_3184	0.60	-0.1
3,612,312	-		PP_3184	0.60	-0.2
3,612,338	+		PP_3184	0.60	-1.3
3,612,339	-		PP_3184	0.60	-1.1
3,612,566	+		PP_3184	0.67	-3.2
3,612,572	+		PP_3184	0.67	-0.7
3,612,572	+		PP_3184	0.67	-0.0
3,612,573	-		PP_3184	0.67	+0.8
3,612,573	-		PP_3184	0.67	-0.4
3,612,573	-		PP_3184	0.67	+0.2
3,612,593	+		PP_3184	0.68	+0.2
3,612,594	-				+1.8
3,612,657	+		PP_3184	0.70	+0.4
3,612,657	+		PP_3184	0.70	-0.2
3,612,707	+		PP_3184	0.71	+0.0
3,612,875	+		PP_3184	0.76	-1.3
3,612,875	+		PP_3184	0.76	-0.3
3,612,878	+		PP_3184	0.76	-1.0
3,612,911	+		PP_3184	0.77	+0.1
3,612,911	+		PP_3184	0.77	-2.4
3,612,911	+		PP_3184	0.77	-2.8
3,612,911	+		PP_3184	0.77	-1.1
3,612,911	+		PP_3184	0.77	-0.5
3,612,912	-		PP_3184	0.77	-2.2
3,612,912	-		PP_3184	0.77	-0.1
3,612,992	+		PP_3184	0.80	+0.6
3,612,992	+		PP_3184	0.80	-1.4
3,613,312	+		PP_3184	0.89	+1.5
3,613,368	+				+0.1
3,613,368	+				-0.8
3,613,369	-				-0.6
3,613,369	-				-0.9
3,613,369	-				-1.6
3,613,374	-				-1.9
3,613,374	-				-0.8
3,613,374	-				+1.6
3,613,374	-				+1.2
3,613,535	+				+0.4
3,613,689	+				-3.7
3,613,765	-				+0.4
3,613,765	-				-1.3
3,613,765	-				-0.3
3,613,765	-				+0.6
3,613,776	+				-0.9
3,613,776	+				-0.1
3,613,776	+				-0.8
3,613,777	-				-0.6
3,613,798	-				+1.5
3,613,902	+				+1.2
3,613,927	+				+1.9
3,613,929	+				-1.3
3,613,930	-				+0.1
3,613,930	-				-0.7
3,613,984	-				+0.0
3,614,386	+		PP_3185	0.40	+0.8
3,614,386	+		PP_3185	0.40	-2.5
3,614,506	+		PP_3185	0.58	+0.3
3,614,507	-		PP_3185	0.58	-1.4
3,614,548	+		PP_3185	0.65	-2.1
3,614,614	-		PP_3185	0.75	+1.1