Strain Fitness in Pseudomonas putida KT2440 around PP_3122

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
3,532,679	+		PP_3121	0.44	-4.1
3,532,701	+		PP_3121	0.47	-1.7
3,532,701	+		PP_3121	0.47	-2.1
3,532,702	-		PP_3121	0.47	-3.9
3,532,702	-		PP_3121	0.47	-2.9
3,533,139	+				+0.6
3,533,140	-				-4.1
3,533,305	+				-2.2
3,533,305	+				-1.4
3,533,306	-				-3.5
3,533,306	-				-3.5
3,533,353	+				-2.7
3,533,353	+				-1.3
3,533,354	-				-2.8
3,533,436	+		PP_3122	0.16	-1.8
3,533,437	-		PP_3122	0.16	-4.6
3,533,437	-		PP_3122	0.16	-0.9
3,533,560	+		PP_3122	0.34	-3.3
3,533,560	+		PP_3122	0.34	-4.0
3,533,560	+		PP_3122	0.34	-0.9
3,533,560	+		PP_3122	0.34	-3.6
3,533,561	-		PP_3122	0.34	-3.6
3,533,561	-		PP_3122	0.34	-1.1
3,533,683	+		PP_3122	0.52	-1.2
3,533,831	-		PP_3122	0.73	-3.3
3,533,956	+				-2.7
3,533,956	+				-3.9
3,533,956	+				-4.0
3,533,956	+				-3.2
3,533,956	+				-3.9
3,533,956	+				-1.1
3,533,956	+				-4.0
3,533,956	+				-3.7
3,533,956	+				-4.4
3,533,956	+				-4.5
3,533,957	-				-3.6
3,533,957	-				-4.7
3,533,957	-				-2.8
3,533,957	-				-1.1
3,534,041	+				-3.2
3,534,042	-				-0.4
3,534,114	+				-2.5
3,534,115	-				-4.4
3,534,117	+				-4.9
3,534,117	+				-3.9
3,534,118	-				-2.1
3,534,118	-				-2.3
3,534,118	-				-3.2
3,534,159	+		PP_3123	0.16	-1.4
3,534,159	+		PP_3123	0.16	-3.6
3,534,159	+		PP_3123	0.16	-3.4
3,534,159	+		PP_3123	0.16	-3.1
3,534,159	+		PP_3123	0.16	-2.6
3,534,159	+		PP_3123	0.16	-2.8
3,534,159	+		PP_3123	0.16	-2.6
3,534,159	+		PP_3123	0.16	-2.9
3,534,160	-		PP_3123	0.16	-4.3
3,534,160	-		PP_3123	0.16	-1.1
3,534,160	-		PP_3123	0.16	-1.4
3,534,160	-		PP_3123	0.16	-1.2
3,534,160	-		PP_3123	0.16	-3.1
3,534,160	-		PP_3123	0.16	-4.3
3,534,160	-		PP_3123	0.16	-2.1
3,534,160	-		PP_3123	0.16	-3.7
3,534,160	-		PP_3123	0.16	-3.7
3,534,160	-		PP_3123	0.16	-3.4
3,534,160	-		PP_3123	0.16	-3.2
3,534,160	-		PP_3123	0.16	-3.5
3,534,711	+				-0.7
3,534,711	+				+1.5
3,534,737	-				-2.5
3,534,766	+				-0.5
3,534,766	+				-0.2
3,534,767	-				-0.4
3,534,803	-				-0.6
3,534,829	-				+1.1
3,534,829	-				+0.8
3,534,829	-				-0.4
3,534,843	+				-1.7
3,534,853	-				-1.5
3,534,853	-				-1.5
3,534,988	-				-1.1