Strain Fitness in Pseudomonas putida KT2440 around PP_2965

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
3,368,774	+		PP_2964	0.69	+0.3
3,368,774	+				+0.0
3,368,774	+		PP_2964	0.69	+0.5
3,368,775	-		PP_2964	0.69	+0.0
3,368,855	+				-0.4
3,368,856	-		PP_2964	0.72	+1.4
3,368,906	+		PP_2964	0.73	-3.0
3,368,906	+		PP_2964	0.73	-0.6
3,368,906	+		PP_2964	0.73	+0.3
3,368,907	-		PP_2964	0.73	+0.1
3,368,960	+		PP_2964	0.75	-0.3
3,368,961	-				+1.2
3,369,086	+		PP_2964	0.79	-1.6
3,369,087	-		PP_2964	0.79	+1.5
3,369,087	-		PP_2964	0.79	-0.3
3,369,094	+		PP_2964	0.80	-1.1
3,369,094	+		PP_2964	0.80	-0.8
3,369,094	+		PP_2964	0.80	-1.3
3,369,095	-		PP_2964	0.80	+0.7
3,369,095	-		PP_2964	0.80	+0.4
3,369,095	-		PP_2964	0.80	+0.2
3,369,228	-		PP_2964	0.84	+0.2
3,369,228	-		PP_2964	0.84	+2.8
3,369,248	+		PP_2964	0.85	-2.3
3,369,249	-		PP_2964	0.85	-0.5
3,369,283	+		PP_2964	0.86	+1.5
3,369,362	+		PP_2964	0.88	-0.9
3,369,362	+		PP_2964	0.88	+0.2
3,369,362	+		PP_2964	0.88	+0.1
3,369,363	-		PP_2964	0.88	+0.7
3,369,447	-				+1.3
3,369,447	-				+0.5
3,369,511	+				+0.4
3,369,512	-				+0.9
3,369,619	+				+1.0
3,369,620	-				-1.3
3,369,708	-				+1.5
3,369,758	-		PP_2965	0.11	+0.9
3,369,776	+		PP_2965	0.16	+0.1
3,369,776	+		PP_2965	0.16	-0.8
3,369,776	+		PP_2965	0.16	+1.1
3,369,777	-		PP_2965	0.16	+0.4
3,369,777	-		PP_2965	0.16	+1.1
3,369,860	+		PP_2965	0.39	+1.0
3,369,861	-		PP_2965	0.39	+1.1
3,369,903	-		PP_2965	0.51	+1.1
3,369,923	+		PP_2965	0.56	+0.0
3,369,923	+		PP_2965	0.56	+0.8
3,369,924	-		PP_2965	0.57	-0.3
3,369,944	+		PP_2965	0.62	+1.4
3,369,944	+		PP_2965	0.62	+4.8
3,369,944	+		PP_2965	0.62	-0.2
3,369,945	-		PP_2965	0.63	+0.5
3,369,945	-		PP_2965	0.63	+1.0
3,369,945	-		PP_2965	0.63	+0.0
3,369,945	-		PP_2965	0.63	+1.0
3,369,948	+		PP_2965	0.63	-1.4
3,369,948	+		PP_2965	0.63	-1.3
3,369,948	+		PP_2965	0.63	+0.2
3,370,040	+		PP_2965	0.89	+0.7
3,370,040	+		PP_2965	0.89	-1.5
3,370,059	-				+1.0
3,370,079	-				+0.9
3,370,098	+				+0.1
3,370,098	+				+0.5
3,370,098	+				-0.5
3,370,099	-				+0.7
3,370,099	-				+0.3
3,370,099	-				-1.7
3,370,100	+				+0.4
3,370,100	+				+1.2
3,370,105	+				-1.9
3,370,106	-				-0.4
3,370,106	-				+0.4
3,370,106	-				+0.1
3,370,146	-				-0.2
3,370,170	+				+0.4
3,370,170	+				+0.4
3,370,170	+				-0.7
3,370,260	-				-0.0
3,370,271	+				+0.6
3,370,272	-				-1.6
3,370,307	+				+0.4
3,370,327	+				+0.0
3,370,327	+				-1.8
3,370,327	+				-0.0
3,370,327	+				+0.8
3,370,328	-				+0.9
3,370,328	-				-0.3
3,370,330	+				+1.0
3,370,330	+				-0.4
3,370,330	+				+0.4
3,370,330	+				+1.0
3,370,331	-				-2.1
3,370,331	-				-0.1
3,370,331	-				-0.3
3,370,331	-				-1.0
3,370,331	-				+0.2
3,370,331	-				+0.5
3,370,331	-				+0.2
3,370,331	-				+0.5
3,370,331	-				-0.6
3,370,334	+				+0.3
3,370,335	-				-0.8
3,370,335	-				+1.3
3,370,375	-				+0.8
3,370,375	-				+1.1
3,370,474	-				+0.4
3,370,481	+				+0.9
3,370,482	-				+0.2
3,370,482	-				-0.9
3,370,525	-				-0.4
3,370,617	+				+0.2
3,370,626	-				-1.3
3,370,678	+				-1.3
3,370,701	+				-0.7
3,370,701	+				+0.6
3,370,701	+				-0.3
3,370,714	+				+1.1
3,370,872	+		PP_2968	0.20	-0.1
3,370,873	-		PP_2968	0.20	+0.0
3,370,873	-		PP_2968	0.20	-1.9
3,370,970	+		PP_2968	0.29	-0.2