Strain Fitness in Pseudomonas putida KT2440 around PP_2961

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
3,363,348	-				+2.0
3,363,369	+				+0.3
3,363,387	+				-0.2
3,363,387	+				+1.1
3,363,387	+				+0.8
3,363,387	+				-1.3
3,363,387	+				+0.2
3,363,387	+				-1.1
3,363,388	-				+0.3
3,363,388	-				-1.9
3,363,388	-				+0.9
3,363,390	+				+1.1
3,363,390	+				+2.2
3,363,391	-				-0.3
3,363,391	-				-3.0
3,363,431	+				+0.6
3,363,431	+				-0.5
3,363,432	-				+0.5
3,363,432	-				-0.0
3,363,432	-				+1.1
3,363,482	+				+0.0
3,363,482	+				-0.3
3,363,482	+				-0.4
3,363,483	-				-0.1
3,363,486	+				+1.3
3,363,487	-				-1.0
3,363,487	-				-2.1
3,363,507	+				+0.2
3,363,710	+		PP_2960	0.30	+1.9
3,363,711	-		PP_2960	0.30	-0.6
3,364,101	+		PP_2960	0.78	+0.1
3,364,101	+		PP_2960	0.78	-0.2
3,364,101	+		PP_2960	0.78	+1.3
3,364,102	-		PP_2960	0.78	+0.4
3,364,348	+				-2.0
3,364,349	-				+0.6
3,364,349	-				-0.1
3,364,349	-				+2.0
3,364,349	-				+0.1
3,364,463	+		PP_2961	0.13	-0.2
3,364,464	-		PP_2961	0.13	+0.8
3,364,633	+		PP_2961	0.33	-0.6
3,364,715	-		PP_2961	0.42	-2.2
3,364,729	+		PP_2961	0.43	+0.5
3,364,729	+		PP_2961	0.43	-0.1
3,364,729	+		PP_2961	0.43	-0.7
3,364,730	-		PP_2961	0.44	+0.4
3,364,730	-		PP_2961	0.44	+0.9
3,364,838	-		PP_2961	0.56	-0.6
3,364,838	-		PP_2961	0.56	-0.4
3,364,906	-		PP_2961	0.64	+2.2
3,364,921	+		PP_2961	0.65	+0.2
3,364,922	-		PP_2961	0.65	+0.2
3,364,999	-		PP_2961	0.74	+1.5
3,364,999	-		PP_2961	0.74	+2.1
3,365,030	-		PP_2961	0.78	-0.5
3,365,098	+		PP_2961	0.85	-1.2
3,365,099	-		PP_2961	0.86	-0.4
3,365,099	-		PP_2961	0.86	-0.2
3,365,253	+				+0.5
3,365,253	+				+1.6
3,365,254	-				+0.7
3,365,254	-				-0.4
3,365,254	-				+0.6
3,365,303	+				+0.9
3,365,304	-				-1.4
3,365,304	-				-2.3
3,365,645	+		PP_2962	0.31	-0.1
3,365,645	+		PP_2962	0.31	-0.1
3,365,646	-		PP_2962	0.31	-0.6
3,365,725	-		PP_2962	0.39	+0.8
3,365,771	-		PP_2962	0.44	-1.4
3,365,858	+				+2.2
3,365,859	-		PP_2962	0.52	+0.6
3,365,883	+		PP_2962	0.55	+0.3
3,365,884	-		PP_2962	0.55	-0.5
3,365,937	+		PP_2962	0.60	-1.6
3,365,937	+		PP_2962	0.60	-1.0
3,365,937	+		PP_2962	0.60	-1.2
3,365,945	+		PP_2962	0.61	-2.9
3,365,945	+		PP_2962	0.61	-2.2
3,365,945	+		PP_2962	0.61	-2.9
3,365,946	-		PP_2962	0.61	-0.1
3,365,946	-		PP_2962	0.61	+1.3
3,365,946	-		PP_2962	0.61	-1.8
3,365,946	-		PP_2962	0.61	-1.4
3,365,957	+		PP_2962	0.62	-0.3
3,365,957	+		PP_2962	0.62	+0.5
3,365,957	+		PP_2962	0.62	-0.5
3,365,958	-		PP_2962	0.62	-0.3
3,365,958	-		PP_2962	0.62	+1.4
3,365,958	-		PP_2962	0.62	-0.9
3,365,959	+		PP_2962	0.62	+1.3
3,365,959	+		PP_2962	0.62	+0.4
3,365,959	+				+2.3
3,365,959	+		PP_2962	0.62	+0.7
3,365,960	-		PP_2962	0.63	+1.0
3,365,960	-		PP_2962	0.63	-0.1
3,365,987	+		PP_2962	0.65	+0.1
3,365,987	+		PP_2962	0.65	+0.6
3,366,034	-		PP_2962	0.70	-0.2
3,366,034	-		PP_2962	0.70	-1.3
3,366,041	+		PP_2962	0.71	-0.0
3,366,041	+		PP_2962	0.71	-0.2
3,366,042	-		PP_2962	0.71	-0.4
3,366,042	-		PP_2962	0.71	+0.9
3,366,043	+		PP_2962	0.71	-1.2
3,366,043	+		PP_2962	0.71	-0.8
3,366,054	+		PP_2962	0.72	+1.7
3,366,097	-		PP_2962	0.76	+1.2
3,366,117	-		PP_2962	0.78	+0.7
3,366,126	+		PP_2962	0.79	+0.6
3,366,126	+				+1.8
3,366,127	-		PP_2962	0.79	-0.4
3,366,131	-		PP_2962	0.80	+0.6
3,366,179	-		PP_2962	0.84	+0.1