Strain Fitness in Pseudomonas putida KT2440 around PP_2925

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
3,324,274	+		PP_2924	0.31	-2.8
3,324,274	+		PP_2924	0.31	+0.7
3,324,355	+		PP_2924	0.38	-0.7
3,324,356	-		PP_2924	0.38	+1.7
3,324,356	-		PP_2924	0.38	-2.2
3,324,356	-		PP_2924	0.38	+2.6
3,324,356	-		PP_2924	0.38	+1.3
3,324,386	-		PP_2924	0.40	+0.4
3,324,413	+		PP_2924	0.42	+0.2
3,324,413	+		PP_2924	0.42	-1.3
3,324,414	-		PP_2924	0.42	-2.4
3,324,414	-		PP_2924	0.42	-1.5
3,324,642	+		PP_2924	0.61	+0.0
3,324,643	-		PP_2924	0.61	+0.4
3,324,685	+		PP_2924	0.64	-3.5
3,324,685	+		PP_2924	0.64	-2.7
3,324,685	+		PP_2924	0.64	-1.4
3,324,686	-		PP_2924	0.64	-0.3
3,324,748	+		PP_2924	0.69	-0.3
3,324,749	-		PP_2924	0.69	-0.5
3,324,925	-		PP_2924	0.83	+0.7
3,324,961	+		PP_2924	0.86	-1.0
3,324,961	+		PP_2924	0.86	+0.7
3,324,961	+		PP_2924	0.86	-0.8
3,324,962	-		PP_2924	0.86	+0.2
3,324,974	+		PP_2924	0.87	+1.9
3,324,975	-		PP_2924	0.87	-1.5
3,324,975	-		PP_2924	0.87	-2.8
3,325,057	+				+0.6
3,325,058	-				-1.4
3,325,247	+				+0.2
3,325,248	-				+0.9
3,325,376	+				+0.5
3,325,377	-				+2.2
3,325,377	-				+0.8
3,325,516	-		PP_2925	0.17	-2.1
3,325,711	-		PP_2925	0.29	+0.3
3,325,753	-		PP_2925	0.31	+2.4
3,325,885	-		PP_2925	0.39	+2.2
3,325,885	-		PP_2925	0.39	+0.2
3,326,100	+		PP_2925	0.53	+1.4
3,326,100	+		PP_2925	0.53	+0.4
3,326,100	+		PP_2925	0.53	+1.9
3,326,179	-		PP_2925	0.57	+1.0
3,326,236	+		PP_2925	0.61	-0.2
3,326,451	+		PP_2925	0.74	-1.3
3,326,633	+		PP_2925	0.85	-0.8
3,326,633	+		PP_2925	0.85	-0.3
3,326,755	+				-0.1
3,326,772	+				+0.7
3,326,773	-				-0.5
3,326,774	+				+0.6
3,326,774	+				-1.3
3,326,774	+				-0.3
3,326,775	-				-0.1
3,326,775	-				-0.0
3,326,775	-				-0.1
3,326,866	-				-0.7
3,326,914	+				+1.5
3,326,914	+				+0.2
3,326,915	-				+0.2
3,327,023	-		PP_2926	0.11	+0.3
3,327,218	+		PP_2926	0.26	+0.7
3,327,445	+		PP_2926	0.43	+0.4
3,327,446	-		PP_2926	0.43	-1.3
3,327,583	+		PP_2926	0.53	-1.0
3,327,583	+		PP_2926	0.53	-0.7
3,327,584	-		PP_2926	0.53	-0.5
3,327,584	-		PP_2926	0.53	-2.9
3,327,584	-		PP_2926	0.53	-1.0
3,327,652	+		PP_2926	0.58	+0.1
3,327,653	-		PP_2926	0.58	-0.0
3,327,653	-		PP_2926	0.58	-1.7
3,327,830	+		PP_2926	0.72	-1.4