Strain Fitness in Pseudomonas putida KT2440 around PP_2922

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
3,321,089	+				+0.7
3,321,090	-				-1.3
3,321,134	+				-2.4
3,321,134	+				+0.6
3,321,134	+				-0.2
3,321,134	+				+0.6
3,321,135	-				+0.4
3,321,135	-				+1.0
3,321,225	-		PP_2921	0.17	+0.7
3,321,423	+		PP_2921	0.38	-1.1
3,321,423	+		PP_2921	0.38	-0.4
3,321,502	-		PP_2921	0.47	+0.3
3,321,720	+		PP_2921	0.70	+0.1
3,321,721	-		PP_2921	0.70	-0.6
3,321,721	-		PP_2921	0.70	-0.5
3,321,778	-		PP_2921	0.76	+0.7
3,321,857	+		PP_2921	0.84	-0.6
3,321,873	+		PP_2921	0.86	+0.7
3,321,874	-		PP_2921	0.86	-0.9
3,321,874	-		PP_2921	0.86	+0.0
3,321,874	-		PP_2921	0.86	-0.2
3,322,011	+				+0.2
3,322,061	+				+1.2
3,322,061	+				+0.6
3,322,062	-				+0.9
3,322,064	+				+1.1
3,322,065	-				+2.5
3,322,076	-				+0.8
3,322,103	+		PP_2922	0.10	-0.8
3,322,103	+		PP_2922	0.10	-0.4
3,322,391	+		PP_2922	0.40	-0.7
3,322,391	+		PP_2922	0.40	+2.2
3,322,556	+		PP_2922	0.57	-0.7
3,323,240	+		PP_2923	0.24	+0.3
3,323,243	+		PP_2923	0.24	-1.3
3,323,244	-		PP_2923	0.24	+0.6
3,323,244	-		PP_2923	0.24	+0.2
3,323,244	-		PP_2923	0.24	+0.3
3,323,448	-		PP_2923	0.48	+0.6