Strain Fitness in Pseudomonas putida KT2440 around PP_2890

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
3,287,048	+		PP_2889	0.72	-3.4
3,287,049	-		PP_2889	0.72	-3.7
3,287,054	+		PP_2889	0.73	-1.9
3,287,165	-		PP_2889	0.87	-0.2
3,287,182	+		PP_2889	0.90	-0.5
3,287,182	+		PP_2889	0.90	-2.6
3,287,183	-		PP_2889	0.90	-1.4
3,287,183	-		PP_2889	0.90	-2.9
3,287,184	+				-1.9
3,287,257	+				-0.3
3,287,257	+				+1.6
3,287,257	+				-1.8
3,287,257	+				+0.0
3,287,257	+				+0.0
3,287,258	-				-0.1
3,287,298	-				-2.3
3,287,361	+				-1.6
3,287,361	+				-0.5
3,287,503	-		PP_2890	0.25	-4.0
3,287,523	-		PP_2890	0.27	+1.5
3,287,523	-		PP_2890	0.27	-1.3
3,287,523	-		PP_2890	0.27	-0.6
3,287,784	+		PP_2890	0.60	+0.4
3,287,831	-		PP_2890	0.65	-0.6
3,287,946	+		PP_2890	0.79	-2.1
3,287,946	+		PP_2890	0.79	-2.5
3,287,947	-		PP_2890	0.80	-2.9
3,287,947	-		PP_2890	0.80	-1.0
3,287,958	+		PP_2890	0.81	-0.6
3,288,195	+				+0.2
3,288,326	+		PP_2891	0.12	-0.5
3,288,354	-		PP_2891	0.16	-0.3
3,288,354	-		PP_2891	0.16	-3.0
3,288,354	-		PP_2891	0.16	-0.8
3,288,386	+		PP_2891	0.20	-0.6
3,288,386	+		PP_2891	0.20	-0.4
3,288,387	-		PP_2891	0.21	-1.8
3,288,387	-		PP_2891	0.21	+0.8
3,288,388	+		PP_2891	0.21	-0.4
3,288,388	+		PP_2891	0.21	+0.8
3,288,389	-		PP_2891	0.21	+0.3
3,288,389	-		PP_2891	0.21	-0.6
3,288,464	+		PP_2891	0.32	-1.2
3,288,608	-		PP_2891	0.53	-0.6
3,288,617	+		PP_2891	0.54	-0.2
3,288,626	+		PP_2891	0.56	-0.4
3,288,732	+		PP_2891	0.71	+0.1
3,288,732	+		PP_2891	0.71	-2.1
3,288,796	+		PP_2891	0.81	-0.0
3,288,806	+		PP_2891	0.82	-0.2
3,288,806	+		PP_2891	0.82	+0.5
3,288,806	+		PP_2891	0.82	+1.6
3,288,807	-		PP_2891	0.82	+0.4
3,288,807	-		PP_2891	0.82	-0.1
3,288,818	+		PP_2891	0.84	+0.0
3,288,852	+		PP_2891	0.89	+0.6
3,288,853	-		PP_2891	0.89	+1.2
3,288,853	-		PP_2891	0.89	-0.3
3,288,859	-				-2.8
3,288,859	-				-0.4
3,288,892	+				-1.8
3,288,966	-				-1.3
3,288,984	+				+0.6
3,288,984	+				-0.9
3,288,985	-				-0.2
3,288,985	-				-0.0
3,288,985	-				+0.0
3,289,012	+				+0.2
3,289,107	+				+0.6
3,289,107	+				+0.7
3,289,107	+				+0.9
3,289,107	+				+1.3
3,289,109	+				-0.4
3,289,110	-				-0.8
3,289,110	-				+0.7
3,289,110	-				+3.7
3,289,110	-				-0.4
3,289,110	-				-2.7
3,289,110	-				+0.7
3,289,111	+				-0.4
3,289,111	+				-0.3
3,289,111	+				-0.4
3,289,111	+				+0.1
3,289,111	+				+0.7
3,289,112	-				-0.1
3,289,112	-				+0.2
3,289,112	-				+0.8
3,289,112	-				+0.0
3,289,112	-				-1.4