Strain Fitness in Pseudomonas putida KT2440 around PP_2851

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
3,251,813	-				+0.1
3,251,813	-				+1.6
3,251,813	-				-0.9
3,251,856	+				+0.8
3,251,857	-				+0.4
3,251,979	+		PP_2849	0.21	+0.2
3,251,979	+		PP_2849	0.21	-1.2
3,251,979	+				+1.1
3,251,980	-		PP_2849	0.21	-1.2
3,251,980	-		PP_2849	0.21	+3.4
3,252,318	+		PP_2849	0.75	-1.4
3,252,318	+		PP_2849	0.75	-0.3
3,252,318	+		PP_2849	0.75	+0.6
3,252,319	-		PP_2849	0.76	+0.3
3,252,319	-		PP_2849	0.76	-0.7
3,252,319	-		PP_2849	0.76	-1.0
3,252,319	-		PP_2849	0.76	+1.8
3,252,323	-		PP_2849	0.76	-0.3
3,252,562	+				-2.9
3,252,753	+				+1.1
3,252,829	-		PP_2851	0.16	-1.6
3,252,829	-		PP_2851	0.16	-0.8
3,252,870	+		PP_2851	0.22	+0.4
3,252,871	-		PP_2851	0.22	-0.2
3,252,871	-		PP_2851	0.22	-0.0
3,252,879	+		PP_2851	0.23	-2.9
3,252,879	+		PP_2851	0.23	-0.9
3,252,880	-		PP_2851	0.23	-0.9
3,252,880	-		PP_2851	0.23	+0.3
3,252,945	+		PP_2851	0.32	+0.2
3,252,945	+		PP_2851	0.32	+0.3
3,252,954	+		PP_2851	0.33	-0.4
3,252,954	+		PP_2851	0.33	+0.3
3,252,954	+		PP_2851	0.33	+0.4
3,252,955	-		PP_2851	0.33	-0.0
3,252,955	-		PP_2851	0.33	-0.7
3,252,955	-		PP_2851	0.33	-0.3
3,252,955	-		PP_2851	0.33	-1.1
3,252,961	-		PP_2851	0.34	-1.4
3,253,029	+		PP_2851	0.43	-1.2
3,253,080	+		PP_2851	0.50	-0.3
3,253,147	-		PP_2851	0.60	-0.4
3,253,213	-		PP_2851	0.69	-0.1
3,253,530	-				+0.0
3,253,553	+				+1.1
3,253,554	-				-2.6
3,253,629	+				+0.3
3,253,629	+				-1.5
3,253,629	+				+0.2
3,253,645	+				-0.2
3,253,735	-				-0.0
3,253,795	+		PP_2852	0.12	+0.5
3,253,795	+		PP_2852	0.12	+0.4
3,253,796	-		PP_2852	0.12	+0.7
3,253,796	-		PP_2852	0.12	-2.4
3,254,048	-		PP_2852	0.23	+0.6
3,254,084	-		PP_2852	0.25	+0.4
3,254,161	+		PP_2852	0.28	+1.2
3,254,161	+		PP_2852	0.28	+0.4
3,254,162	-		PP_2852	0.28	+1.0
3,254,270	+		PP_2852	0.33	+0.5
3,254,278	+		PP_2852	0.34	+0.4
3,254,278	+		PP_2852	0.34	+0.1
3,254,327	+		PP_2852	0.36	+0.0
3,254,327	+		PP_2852	0.36	+0.5
3,254,327	+		PP_2852	0.36	+0.5
3,254,328	-		PP_2852	0.36	-0.8
3,254,328	-		PP_2852	0.36	+0.5
3,254,328	-		PP_2852	0.36	-0.9