Strain Fitness in Pseudomonas putida KT2440 around PP_2801

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
3,191,478	+		PP_2800	0.58	-0.1
3,191,494	-		PP_2800	0.60	-1.6
3,191,583	+		PP_2800	0.67	+0.3
3,191,592	+		PP_2800	0.68	+0.5
3,191,691	+		PP_2800	0.75	+1.1
3,191,841	+		PP_2800	0.87	-0.0
3,191,841	+		PP_2800	0.87	+0.9
3,191,842	-		PP_2800	0.87	+0.5
3,191,878	-				-0.1
3,192,003	-				+2.2
3,192,070	+				+0.9
3,192,085	+				+0.4
3,192,086	-				+1.7
3,192,086	-				-0.7
3,192,429	+		PP_2801	0.28	-4.0
3,192,429	+		PP_2801	0.28	+0.5
3,192,429	+		PP_2801	0.28	-0.8
3,192,430	-		PP_2801	0.28	-0.5
3,192,430	-		PP_2801	0.28	+1.0
3,192,430	-		PP_2801	0.28	-0.1
3,192,430	-		PP_2801	0.28	-2.6
3,192,431	+		PP_2801	0.28	+0.4
3,192,431	+		PP_2801	0.28	-0.4
3,192,601	+		PP_2801	0.40	-0.7
3,192,602	-		PP_2801	0.40	-0.1
3,192,602	-		PP_2801	0.40	+0.1
3,192,641	-		PP_2801	0.42	-1.4
3,192,728	+		PP_2801	0.49	-1.5
3,192,728	+		PP_2801	0.49	-2.8
3,192,729	-		PP_2801	0.49	-3.8
3,192,741	-		PP_2801	0.49	-1.4
3,192,784	-		PP_2801	0.52	-1.5
3,192,784	-		PP_2801	0.52	+0.1
3,193,368	+				+1.0
3,193,368	+				-0.1
3,193,368	+				-1.8
3,193,369	-				+2.1
3,193,396	+				+0.9
3,193,396	+				+1.9
3,193,396	+				+0.4
3,193,539	+				+0.7
3,193,539	+				-0.1
3,193,541	+				-0.5
3,193,541	+				-0.6
3,193,541	+				+0.5
3,193,542	-				+0.5
3,194,121	+		PP_2802	0.44	-1.7
3,194,121	+		PP_2802	0.44	+0.4
3,194,136	+		PP_2802	0.45	+0.4
3,194,353	-		PP_2802	0.61	-0.2
3,194,353	-		PP_2802	0.61	+0.7
3,194,353	-		PP_2802	0.61	-1.3