Strain Fitness in Pseudomonas putida KT2440 around PP_2699

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
3,089,251	-				-1.5
3,089,294	-		PP_2698	0.11	+0.8
3,089,294	-		PP_2698	0.11	+0.9
3,089,510	-				+2.1
3,089,572	+		PP_2698	0.38	+0.2
3,089,573	-		PP_2698	0.38	+1.8
3,089,579	+		PP_2698	0.39	-0.8
3,089,580	-		PP_2698	0.39	-2.5
3,089,580	-		PP_2698	0.39	-1.2
3,089,788	+		PP_2698	0.59	+0.5
3,089,788	+		PP_2698	0.59	-0.5
3,089,788	+		PP_2698	0.59	+0.6
3,089,788	+		PP_2698	0.59	+1.0
3,090,000	-		PP_2698	0.79	-0.1
3,090,249	+				-0.8
3,090,249	+				+1.1
3,090,354	+		PP_2699	0.11	+0.7
3,090,375	+		PP_2699	0.13	+0.7
3,090,402	+		PP_2699	0.15	+2.1
3,090,433	-		PP_2699	0.18	+0.6
3,090,570	+		PP_2699	0.31	+3.0
3,090,600	+		PP_2699	0.34	+0.8
3,090,618	+		PP_2699	0.36	+1.1
3,090,618	+		PP_2699	0.36	+0.0
3,090,619	-		PP_2699	0.36	-1.3
3,090,619	-		PP_2699	0.36	-0.0
3,090,633	+		PP_2699	0.37	+1.6
3,090,675	+		PP_2699	0.41	+0.4
3,090,675	+		PP_2699	0.41	+0.0
3,090,676	-		PP_2699	0.42	+1.3
3,090,735	+		PP_2699	0.47	+0.1
3,090,735	+		PP_2699	0.47	+1.4
3,090,824	-		PP_2699	0.56	+0.6
3,090,840	-		PP_2699	0.57	+0.7
3,090,853	-		PP_2699	0.58	-1.8
3,090,865	-		PP_2699	0.59	+0.1
3,090,880	+		PP_2699	0.61	+0.2
3,090,885	-		PP_2699	0.61	+0.1
3,090,925	+		PP_2699	0.65	-2.2
3,090,927	+		PP_2699	0.65	-0.0
3,090,927	+		PP_2699	0.65	+1.5
3,090,928	-		PP_2699	0.65	+1.7
3,090,999	-		PP_2699	0.72	+0.2
3,091,021	-		PP_2699	0.74	+0.9
3,091,021	-		PP_2699	0.74	+0.5
3,091,276	+				+1.6
3,091,323	-				-0.0
3,091,327	+				+1.4
3,091,327	+				-0.1
3,091,327	+				+0.3
3,091,328	-				+2.3
3,091,360	-				+0.6
3,091,498	+				-0.5
3,091,498	+				+0.2
3,091,499	-				+1.1
3,091,499	-				-2.8
3,091,874	+		PP_2700	0.84	-0.2
3,091,882	+		PP_2700	0.86	+1.6
3,091,883	-		PP_2700	0.86	+0.9
3,091,883	-		PP_2700	0.86	-1.5
3,091,957	+				+0.5
3,092,032	-				-1.1
3,092,079	-				+0.0
3,092,079	-				-0.7
3,092,088	-				-0.8
3,092,121	-				+0.7
3,092,121	-				+0.7
3,092,121	-				+1.9
3,092,121	-				+1.1
3,092,167	+		PP_2701	0.14	+0.7
3,092,174	+		PP_2701	0.14	+0.2
3,092,174	+		PP_2701	0.14	+0.6
3,092,255	-		PP_2701	0.23	+1.7
3,092,263	+		PP_2701	0.24	+0.3
3,092,264	-		PP_2701	0.24	+0.3