Strain Fitness in Pseudomonas putida KT2440 around PP_2596

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
2,966,045	-		PP_2595	0.67	-0.0
2,966,218	+		PP_2595	0.77	-0.2
2,966,219	-		PP_2595	0.77	-0.2
2,966,481	-				+1.0
2,966,481	-				-1.4
2,966,495	+				-1.2
2,966,495	+				+1.0
2,966,496	-				-0.6
2,966,544	-				-1.8
2,966,550	+				+0.6
2,966,571	+				+0.3
2,966,685	-				-0.3
2,966,685	-				-3.5
2,966,987	+		PP_2596	0.20	+0.7
2,967,137	-		PP_2596	0.29	-0.8
2,967,147	-		PP_2596	0.29	+0.6
2,967,224	-		PP_2596	0.34	-1.8
2,967,474	+		PP_2596	0.48	-1.2
2,967,479	+		PP_2596	0.48	-0.9
2,967,479	+		PP_2596	0.48	-0.1
2,967,479	+		PP_2596	0.48	-3.0
2,967,480	-		PP_2596	0.48	+0.2
2,967,535	+		PP_2596	0.51	+0.1
2,967,535	+		PP_2596	0.51	-1.5
2,967,536	-		PP_2596	0.51	-2.0
2,967,536	-		PP_2596	0.51	-1.0
2,967,542	-		PP_2596	0.51	+0.4
2,968,489	+				-1.7
2,968,490	-				+1.9
2,968,670	+		PP_2597	0.24	+1.4
2,968,671	-		PP_2597	0.24	-4.1
2,968,671	-		PP_2597	0.24	-2.3
2,968,671	-		PP_2597	0.24	+0.8
2,968,781	+		PP_2597	0.42	-0.7
2,968,844	+		PP_2597	0.52	-0.5
2,968,845	-		PP_2597	0.53	-0.9
2,968,845	-		PP_2597	0.53	-0.1
2,968,845	-		PP_2597	0.53	-1.0
2,968,845	-		PP_2597	0.53	-2.8
2,969,000	+		PP_2597	0.78	-0.1
2,969,001	-		PP_2597	0.78	-0.0
2,969,143	+				-0.5
2,969,143	+				+0.2
2,969,143	+				-1.1
2,969,161	+				-0.8
2,969,162	-				-1.1
2,969,206	+				+2.3
2,969,206	+				+1.5
2,969,206	+				-0.6
2,969,206	+				-2.4
2,969,207	-				-0.1
2,969,207	-				-0.7
2,969,213	+				-1.5
2,969,213	+				-0.3
2,969,214	-				-0.4
2,969,214	-				+0.3
2,969,332	+				-0.9