Strain Fitness in Pseudomonas putida KT2440 around PP_2572

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
2,939,387	+				-0.3
2,939,387	+				-0.2
2,939,393	+				-0.3
2,939,451	+				+0.9
2,939,452	-				+1.1
2,939,504	+				+1.1
2,939,598	-		PP_2572	0.16	+0.6
2,939,747	+		PP_2572	0.39	-0.1
2,939,748	-		PP_2572	0.39	+0.4
2,939,780	-		PP_2572	0.44	-1.0
2,939,783	+		PP_2572	0.45	-0.7
2,939,783	+		PP_2572	0.45	-0.6
2,939,784	-		PP_2572	0.45	-2.1
2,940,295	+				+0.7
2,940,296	-		PP_2573	0.49	+0.7
2,940,296	-		PP_2573	0.49	-0.2
2,940,296	-		PP_2573	0.49	-3.6
2,940,296	-		PP_2573	0.49	-1.2
2,940,296	-		PP_2573	0.49	-2.3
2,940,424	-		PP_2573	0.82	-2.0
2,940,427	+		PP_2573	0.83	+1.7
2,940,427	+		PP_2573	0.83	+1.2
2,940,427	+		PP_2573	0.83	+1.7
2,940,428	-		PP_2573	0.83	+1.5
2,940,428	-		PP_2573	0.83	-1.0
2,940,428	-		PP_2573	0.83	-1.6
2,940,492	-				+0.7
2,940,492	-				+1.6
2,940,506	+				-0.5
2,940,506	+				-0.7
2,940,523	+				-0.3
2,940,524	-				+0.9
2,940,529	+				+0.2
2,940,530	-				-0.1
2,940,633	+				-0.2
2,940,633	+				+0.1
2,940,633	+				+1.1
2,940,646	+				-0.3
2,940,669	-				-0.1
2,940,715	+				-0.1
2,940,763	+				+0.0
2,940,763	+				+2.4
2,940,764	-				+0.3
2,940,764	-				-0.1
2,940,778	+				-0.3
2,940,779	-				-1.1
2,940,780	+				-1.2
2,940,780	+				+0.1
2,940,781	-				+0.6
2,940,781	-				-1.3
2,940,781	-				+0.7
2,940,800	-				+0.5
2,940,853	+				-2.2
2,940,853	+				+0.4
2,940,854	-				+0.0
2,940,854	-				-1.3
2,941,093	+		PP_2574	0.36	-3.1