Strain Fitness in Pseudomonas putida KT2440 around PP_2534

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
2,878,169	+		PP_2533	0.16	+0.9
2,878,169	+		PP_2533	0.16	-0.4
2,878,274	+		PP_2533	0.27	-0.5
2,878,275	-		PP_2533	0.27	-0.8
2,878,406	-		PP_2533	0.40	+1.3
2,878,970	+				+0.3
2,879,044	+				+1.0
2,879,049	+				-0.6
2,879,167	-				+0.6
2,879,180	+				-0.8
2,879,181	-				+0.1
2,879,281	-		PP_2534	0.13	+0.3
2,879,281	-		PP_2534	0.13	+1.0
2,879,281	-		PP_2534	0.13	-1.3
2,879,281	-		PP_2534	0.13	-0.5
2,879,333	-		PP_2534	0.19	-0.0
2,879,406	-		PP_2534	0.27	-1.6
2,879,408	-		PP_2534	0.27	-0.6
2,879,434	+		PP_2534	0.30	-0.2
2,879,434	+		PP_2534	0.30	-0.0
2,879,434	+		PP_2534	0.30	-0.6
2,879,435	-		PP_2534	0.30	+0.6
2,879,435	-		PP_2534	0.30	+0.5
2,879,535	+		PP_2534	0.41	+0.1
2,879,536	-		PP_2534	0.41	+0.7
2,879,548	-		PP_2534	0.43	+2.0
2,879,548	-		PP_2534	0.43	+1.4
2,879,657	+		PP_2534	0.55	+0.6
2,879,658	-		PP_2534	0.55	-0.1
2,879,658	-		PP_2534	0.55	+0.3
2,879,863	-		PP_2534	0.78	-2.0
2,880,105	+				+0.1
2,880,105	+				+0.2
2,880,105	+				+0.6
2,880,105	+				+2.5
2,880,105	+				+0.9
2,880,105	+				+0.7
2,880,106	-				-0.7
2,880,106	-				-0.1
2,880,128	+				+0.5
2,880,146	+				-0.2
2,880,146	+				+0.2
2,880,146	+				+2.0
2,880,146	+				-0.3
2,880,164	+				+0.6
2,880,304	-		PP_2535	0.12	+3.4
2,880,304	-		PP_2535	0.12	-0.6
2,880,304	-		PP_2535	0.12	+0.2
2,880,304	-		PP_2535	0.12	+0.5
2,880,435	+		PP_2535	0.23	-1.3
2,880,436	-		PP_2535	0.24	+0.6
2,880,691	-		PP_2535	0.45	-0.6
2,880,825	+		PP_2535	0.57	+0.0
2,880,826	-		PP_2535	0.57	-0.3
2,880,826	-		PP_2535	0.57	-0.7
2,880,826	-		PP_2535	0.57	+0.9