Strain Fitness in Pseudomonas putida KT2440 around PP_2492

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
2,839,689	+		PP_5529	0.32	+1.2
2,839,711	+		PP_5529	0.39	-1.0
2,839,725	-		PP_5529	0.44	-3.6
2,839,725	-		PP_5529	0.44	+0.0
2,839,725	-		PP_5529	0.44	-2.3
2,839,776	+		PP_5529	0.61	-0.3
2,839,834	-		PP_5529	0.80	-2.1
2,839,834	-		PP_5529	0.80	-3.8
2,839,905	+				-0.7
2,839,905	+				+0.8
2,839,906	-				-2.5
2,839,994	+		PP_2491	0.13	+0.0
2,839,994	+		PP_2491	0.13	+0.8
2,839,994	+		PP_2491	0.13	+0.9
2,839,994	+		PP_2491	0.13	+0.7
2,839,994	+		PP_2491	0.13	+0.5
2,839,994	+		PP_2491	0.13	-0.1
2,839,995	-		PP_2491	0.13	-4.2
2,839,995	-		PP_2491	0.13	-2.5
2,839,995	-		PP_2491	0.13	-0.5
2,839,995	-		PP_2491	0.13	-1.1
2,839,995	-		PP_2491	0.13	-2.0
2,839,995	-		PP_2491	0.13	-0.8
2,840,081	+		PP_2491	0.26	+0.0
2,840,081	+		PP_2491	0.26	+0.3
2,840,082	-		PP_2491	0.26	-1.2
2,840,487	+		PP_2491	0.86	-0.7
2,840,491	-		PP_2491	0.87	+0.2
2,840,491	-		PP_2491	0.87	-1.2
2,840,600	-				-0.6
2,840,605	+				+0.8
2,840,609	+				-0.1
2,840,609	+				+1.8
2,840,609	+				-0.1
2,840,610	-				-2.6
2,840,623	+				-3.6
2,840,624	-				-2.9
2,840,700	+				+0.4
2,840,701	-				-1.7
2,840,701	-				-2.0
2,840,701	-				-3.4
2,840,734	-				-4.8
2,840,847	+		PP_2492	0.16	+1.0
2,840,848	-		PP_2492	0.16	-1.2
2,840,848	-		PP_2492	0.16	-3.4
2,840,886	+		PP_2492	0.19	-0.4
2,840,887	-		PP_2492	0.19	-4.0
2,840,887	-		PP_2492	0.19	-2.8
2,840,887	-		PP_2492	0.19	-3.7
2,840,887	-		PP_2492	0.19	-2.8
2,840,888	+		PP_2492	0.19	-0.1
2,840,889	-		PP_2492	0.19	-2.6
2,840,889	-				-1.2
2,840,889	-		PP_2492	0.19	-3.2
2,840,909	-		PP_2492	0.21	-3.5
2,841,032	+		PP_2492	0.32	+0.5
2,841,032	+		PP_2492	0.32	+0.3
2,841,072	-		PP_2492	0.35	-0.0
2,841,115	+		PP_2492	0.39	-0.8
2,841,115	+		PP_2492	0.39	+0.2
2,841,116	-		PP_2492	0.39	-2.2
2,841,116	-		PP_2492	0.39	+0.3
2,841,211	+		PP_2492	0.47	+0.6
2,841,215	+		PP_2492	0.48	+1.1
2,841,215	+		PP_2492	0.48	-0.5
2,841,215	+		PP_2492	0.48	+0.2
2,841,215	+		PP_2492	0.48	+0.9
2,841,216	-		PP_2492	0.48	-1.5
2,841,216	-		PP_2492	0.48	+0.5
2,841,216	-		PP_2492	0.48	+0.4
2,841,216	-		PP_2492	0.48	-0.8
2,841,216	-		PP_2492	0.48	+0.5
2,841,216	-		PP_2492	0.48	+0.0
2,841,216	-		PP_2492	0.48	-0.7
2,841,220	+		PP_2492	0.48	+0.8
2,841,249	+		PP_2492	0.51	-0.3
2,841,249	+		PP_2492	0.51	-0.2
2,841,250	-		PP_2492	0.51	-0.2
2,841,250	-		PP_2492	0.51	-1.3
2,841,250	-		PP_2492	0.51	-1.8
2,841,250	-		PP_2492	0.51	-2.8
2,841,293	+		PP_2492	0.54	-0.1
2,841,297	-		PP_2492	0.55	+0.3
2,841,297	-		PP_2492	0.55	+0.2
2,841,297	-		PP_2492	0.55	+0.2
2,841,373	-		PP_2492	0.61	+0.3
2,841,373	-		PP_2492	0.61	-0.4
2,841,418	-		PP_2492	0.65	+0.7
2,841,418	-		PP_2492	0.65	-0.4
2,841,420	+		PP_2492	0.65	+0.2
2,841,421	-		PP_2492	0.65	-0.6
2,841,449	+		PP_2492	0.68	-1.2
2,841,518	+		PP_2492	0.74	+0.5
2,841,519	-		PP_2492	0.74	+1.8
2,841,519	-		PP_2492	0.74	-0.2
2,841,519	-		PP_2492	0.74	-0.1
2,841,519	-		PP_2492	0.74	-0.0
2,841,552	+		PP_2492	0.77	+1.1
2,841,552	+		PP_2492	0.77	-1.2
2,841,584	+		PP_2492	0.79	+1.7
2,841,611	-		PP_2492	0.82	-2.1
2,841,627	+		PP_2492	0.83	-1.8
2,841,628	-		PP_2492	0.83	+0.0
2,841,628	-		PP_2492	0.83	+0.7
2,841,628	-		PP_2492	0.83	+0.8
2,841,628	-		PP_2492	0.83	-0.5
2,841,628	-		PP_2492	0.83	-2.6
2,841,630	-		PP_2492	0.83	+2.5
2,841,660	+		PP_2492	0.86	+0.4
2,841,660	+		PP_2492	0.86	-2.3
2,841,660	+		PP_2492	0.86	+0.8
2,841,660	+		PP_2492	0.86	-2.2
2,841,661	+		PP_2492	0.86	-0.5
2,841,661	-		PP_2492	0.86	+0.6
2,841,715	+				-0.0
2,841,716	-				+1.9
2,841,716	-				+0.8
2,841,716	-				+0.4
2,841,777	-				+0.4
2,841,785	+				+0.3
2,841,786	-				-0.3
2,841,786	-				-0.3
2,841,786	-				-0.9
2,841,821	+				+1.2
2,841,821	+				-1.6
2,841,914	-				-1.2
2,841,929	-				-2.7
2,841,943	-				-0.9
2,842,016	+				+0.7
2,842,016	+				+0.6
2,842,017	-				-3.0
2,842,046	+				+2.4
2,842,047	-				+0.0
2,842,060	-				+0.3
2,842,077	-				-1.7
2,842,082	+				+0.6
2,842,127	+				+2.7
2,842,132	+		PP_2493	0.11	-1.7
2,842,132	+		PP_2493	0.11	-1.1
2,842,132	+		PP_2493	0.11	-1.2
2,842,133	-		PP_2493	0.11	-4.2
2,842,133	-		PP_2493	0.11	-1.8
2,842,133	-		PP_2493	0.11	-3.7
2,842,133	-		PP_2493	0.11	-0.3
2,842,133	-		PP_2493	0.11	-1.2
2,842,133	-		PP_2493	0.11	-1.8
2,842,134	+		PP_2493	0.11	+0.8
2,842,134	+		PP_2493	0.11	+0.5
2,842,134	+		PP_2493	0.11	-3.1
2,842,134	+		PP_2493	0.11	+1.9
2,842,135	-		PP_2493	0.11	-1.7
2,842,135	-		PP_2493	0.11	-2.8
2,842,135	-		PP_2493	0.11	-2.6
2,842,158	-				+0.2
2,842,158	-		PP_2493	0.15	-1.3
2,842,211	+		PP_2493	0.25	-0.3
2,842,232	+		PP_2493	0.29	+0.3
2,842,233	-		PP_2493	0.29	-1.8
2,842,233	-		PP_2493	0.29	-2.3
2,842,233	-		PP_2493	0.29	-2.6
2,842,341	+		PP_2493	0.49	-0.5
2,842,427	+		PP_2493	0.64	+2.0
2,842,427	+		PP_2493	0.64	-0.4
2,842,428	-		PP_2493	0.65	-3.3
2,842,578	+				+1.4