Strain Fitness in Pseudomonas putida KT2440 around PP_2482

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
2,828,597	+		PP_2480	0.64	-0.7
2,828,597	+		PP_2480	0.64	-0.8
2,828,597	+		PP_2480	0.64	-0.2
2,828,685	-		PP_2480	0.71	+0.2
2,828,713	+		PP_2480	0.73	-0.6
2,828,713	+		PP_2480	0.73	+1.1
2,828,713	+		PP_2480	0.73	+0.3
2,828,713	+		PP_2480	0.73	+0.3
2,828,713	+		PP_2480	0.73	+0.3
2,828,714	-		PP_2480	0.74	-0.1
2,829,040	-				-0.8
2,829,075	+				-2.2
2,829,076	-				-0.8
2,829,084	+				+0.6
2,829,085	-				-2.8
2,829,090	+				+0.7
2,829,182	+		PP_2481	0.35	+0.4
2,829,182	+		PP_2481	0.35	+0.2
2,829,182	+		PP_2481	0.35	+0.4
2,829,183	-		PP_2481	0.36	-0.5
2,829,183	-		PP_2481	0.36	+0.2
2,829,183	-		PP_2481	0.36	-0.9
2,829,183	-		PP_2481	0.36	+0.5
2,829,183	-		PP_2481	0.36	-0.4
2,829,199	+		PP_2481	0.40	+0.5
2,829,199	+		PP_2481	0.40	+0.6
2,829,200	-		PP_2481	0.41	-0.3
2,829,200	-		PP_2481	0.41	-0.6
2,829,281	+		PP_2481	0.65	+0.6
2,829,281	+		PP_2481	0.65	-0.6
2,829,281	+		PP_2481	0.65	-0.7
2,829,281	+		PP_2481	0.65	-2.2
2,829,282	-		PP_2481	0.65	+0.3
2,829,282	-		PP_2481	0.65	-1.6
2,829,332	+		PP_2481	0.80	+0.4
2,829,333	-		PP_2481	0.80	-1.8
2,829,401	+				+0.2
2,829,475	+				+2.8
2,829,476	-				-0.3
2,829,476	-				-0.3
2,829,476	-				+0.1
2,829,644	+		PP_2482	0.25	-1.6
2,829,644	+		PP_2482	0.25	+0.2
2,829,644	+		PP_2482	0.25	+1.3
2,829,644	+		PP_2482	0.25	+1.5
2,829,645	-		PP_2482	0.26	-0.6
2,829,645	-		PP_2482	0.26	-2.3
2,829,645	-		PP_2482	0.26	-0.6
2,829,645	-		PP_2482	0.26	+0.4
2,829,649	-		PP_2482	0.26	-0.6
2,829,649	-		PP_2482	0.26	-1.5
2,829,669	+		PP_2482	0.28	-0.1
2,829,882	+		PP_2482	0.50	-1.8
2,829,882	+		PP_2482	0.50	-0.9
2,829,935	-		PP_2482	0.56	-1.0
2,829,958	-		PP_2482	0.58	-1.0
2,829,958	-		PP_2482	0.58	-0.3
2,829,999	+		PP_2482	0.62	+0.3
2,830,097	-		PP_2482	0.72	-0.8
2,830,099	-		PP_2482	0.72	-1.4
2,830,099	-		PP_2482	0.72	-0.5
2,830,197	-		PP_2482	0.83	-1.1
2,830,198	+		PP_2482	0.83	-1.7
2,830,198	+		PP_2482	0.83	+0.4
2,830,198	+		PP_2482	0.83	+1.8
2,830,198	+		PP_2482	0.83	-0.2
2,830,199	-		PP_2482	0.83	+0.2
2,830,320	+				+0.3
2,830,320	+				-0.7
2,830,555	+		PP_2483	0.35	+0.2
2,830,556	-		PP_2483	0.35	-1.3
2,830,556	-		PP_2483	0.35	-0.8
2,830,556	-		PP_2483	0.35	-1.0
2,830,615	+		PP_2483	0.45	-2.8
2,830,615	+		PP_2483	0.45	-0.3
2,830,615	+		PP_2483	0.45	+0.1
2,830,616	-		PP_2483	0.46	-2.4
2,830,719	-		PP_2483	0.63	+0.5
2,830,772	+		PP_2483	0.71	-1.5
2,830,772	+		PP_2483	0.71	+2.5
2,830,773	-		PP_2483	0.72	+0.0
2,830,826	+		PP_2483	0.81	-0.4
2,830,827	-		PP_2483	0.81	-3.0
2,830,953	+				-0.6
2,830,954	-				-0.7
2,830,981	+				+1.4
2,831,036	+				+1.9
2,831,036	+				-1.1
2,831,039	-				-1.4
2,831,078	+				-2.4
2,831,080	+				-0.8
2,831,080	+				+0.6
2,831,080	+				-0.5
2,831,081	-				-3.0
2,831,081	-				-2.2
2,831,081	-				-3.5
2,831,156	-				-4.2
2,831,226	+				-2.2
2,831,264	-				+0.2
2,831,283	+		PP_2484	0.19	-0.8
2,831,284	-		PP_2484	0.19	+0.2
2,831,284	-		PP_2484	0.19	+0.2
2,831,286	+				+0.2
2,831,334	-		PP_2484	0.36	-0.4