Strain Fitness in Pseudomonas putida KT2440 around PP_2453

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
2,798,205	+		PP_2451	0.23	-0.1
2,798,206	-		PP_2451	0.23	-0.5
2,798,206	-		PP_2451	0.23	+0.2
2,798,206	-		PP_2451	0.23	+0.4
2,798,206	-		PP_2451	0.23	-0.8
2,798,206	-		PP_2451	0.23	-0.1
2,798,220	+		PP_2451	0.25	-0.1
2,798,220	+		PP_2451	0.25	+0.3
2,798,220	+		PP_2451	0.25	-0.4
2,798,221	-		PP_2451	0.25	-0.6
2,798,221	-		PP_2451	0.25	-0.2
2,798,226	+		PP_2451	0.26	-0.8
2,798,226	+		PP_2451	0.26	-1.5
2,798,226	+		PP_2451	0.26	+0.9
2,798,227	-		PP_2451	0.26	-0.1
2,798,227	-		PP_2451	0.26	-0.6
2,798,310	+		PP_2451	0.38	+0.4
2,798,310	+		PP_2451	0.38	-0.4
2,798,310	+		PP_2451	0.38	+0.9
2,798,418	+		PP_2451	0.54	-0.2
2,798,418	+		PP_2451	0.54	+0.4
2,798,418	+		PP_2451	0.54	+0.4
2,798,419	-		PP_2451	0.54	+0.5
2,798,499	-		PP_2451	0.66	+0.5
2,798,589	+		PP_2451	0.78	-1.3
2,798,590	-		PP_2451	0.79	-1.0
2,798,590	-		PP_2451	0.79	-0.3
2,798,593	+		PP_2451	0.79	+0.2
2,798,594	-		PP_2451	0.79	+0.3
2,798,628	+		PP_2451	0.84	+0.9
2,798,628	+		PP_2451	0.84	-0.9
2,798,628	+		PP_2451	0.84	+0.1
2,798,628	+		PP_2451	0.84	-0.1
2,798,628	+		PP_2451	0.84	-0.3
2,798,629	-		PP_2451	0.84	+0.3
2,798,629	-		PP_2451	0.84	-0.4
2,798,629	-		PP_2451	0.84	-0.0
2,798,702	+				+2.6
2,798,702	+				+0.2
2,798,936	+		PP_2452	0.79	-1.5
2,798,936	+		PP_2452	0.79	+0.9
2,798,936	+		PP_2452	0.79	+0.7
2,798,936	+		PP_2452	0.79	+0.5
2,798,936	+		PP_2452	0.79	-1.2
2,798,937	-		PP_2452	0.79	+2.2
2,798,937	-		PP_2452	0.79	+0.7
2,798,937	-		PP_2452	0.79	-1.7
2,798,937	-		PP_2452	0.79	-0.2
2,798,952	+		PP_2452	0.86	+0.7
2,798,952	+		PP_2452	0.86	-1.2
2,798,952	+		PP_2452	0.86	+0.9
2,798,953	-		PP_2452	0.86	+1.1
2,798,953	-		PP_2452	0.86	-0.1
2,799,079	+				+0.0
2,799,080	-				-0.6
2,799,206	+				-1.1
2,799,260	-				+1.1
2,799,349	+		PP_2453	0.13	-0.7
2,799,504	-		PP_2453	0.28	+0.1
2,799,533	+		PP_2453	0.30	+0.2
2,799,534	-		PP_2453	0.30	+0.1
2,799,534	-		PP_2453	0.30	-1.0
2,799,534	-		PP_2453	0.30	-0.0
2,799,794	+		PP_2453	0.54	+0.9
2,799,794	+		PP_2453	0.54	+0.4
2,799,878	-		PP_2453	0.62	-1.1
2,800,045	+		PP_2453	0.77	+0.3
2,800,045	+		PP_2453	0.77	-0.9
2,800,045	+		PP_2453	0.77	+0.6
2,800,045	+		PP_2453	0.77	-0.5
2,800,045	+				-2.0
2,800,046	-		PP_2453	0.78	+1.1
2,800,046	-		PP_2453	0.78	-0.7
2,800,046	-		PP_2453	0.78	+0.3
2,800,046	-		PP_2453	0.78	+0.3
2,800,046	-		PP_2453	0.78	+0.1
2,800,046	-		PP_2453	0.78	-1.2
2,800,115	+		PP_2453	0.84	-0.1
2,800,115	+		PP_2453	0.84	-1.3
2,800,116	-		PP_2453	0.84	-1.6
2,800,116	-		PP_2453	0.84	+0.4
2,800,310	+				+1.6
2,800,311	-				+1.1
2,800,318	+				+0.1
2,800,318	+				-0.4
2,800,319	-				-0.2
2,800,322	+				+1.2
2,800,340	+				-1.3
2,800,342	+				+1.1
2,800,342	+				+0.1
2,800,412	+				-0.1
2,800,412	+				+1.9
2,800,413	-				-0.3
2,800,413	-				-0.8
2,800,413	-				+1.0
2,800,476	+				-0.0
2,800,490	+				+0.4
2,800,490	+				+0.3
2,800,491	-				+0.5
2,800,529	-				-0.9
2,800,597	+				+0.5
2,800,597	+				-0.9
2,800,597	+				+0.7
2,800,598	-				-1.4
2,800,598	-				-0.3
2,800,598	-				-0.4
2,800,622	-				-0.8
2,801,052	+		PP_2454	0.41	+1.2
2,801,123	+		PP_2454	0.48	+1.4
2,801,123	+		PP_2454	0.48	+0.2
2,801,167	+		PP_2454	0.53	+0.9
2,801,168	-		PP_2454	0.53	+1.0