Strain Fitness in Pseudomonas putida KT2440 around PP_2439

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
2,786,043	+		PP_2438	0.41	-1.0
2,786,043	+		PP_2438	0.41	+2.4
2,786,044	-		PP_2438	0.41	+1.0
2,786,074	+		PP_2438	0.44	+3.1
2,786,081	+		PP_2438	0.45	-0.1
2,786,232	+		PP_2438	0.59	-0.6
2,786,233	-		PP_2438	0.59	+0.8
2,786,233	-		PP_2438	0.59	+0.2
2,786,256	-		PP_2438	0.61	+1.0
2,786,256	-		PP_2438	0.61	-1.1
2,786,359	-		PP_2438	0.71	-1.0
2,786,359	-		PP_2438	0.71	+0.6
2,786,428	-		PP_2438	0.77	+0.5
2,786,428	-		PP_2438	0.77	+0.1
2,786,460	+		PP_2438	0.80	-2.1
2,786,483	+		PP_2438	0.83	-0.4
2,786,508	+		PP_2438	0.85	+1.9
2,786,509	-		PP_2438	0.85	+0.4
2,786,766	+				-0.4
2,786,766	+				+1.0
2,786,766	+				-0.4
2,786,767	-				-0.5
2,786,767	-				+0.3
2,786,864	-				-0.5
2,786,880	+				-1.9
2,786,880	+				+0.4
2,786,883	-				-1.5
2,786,937	+				-0.4
2,786,938	-				-1.5
2,786,941	+				-4.1
2,786,942	-				-2.3
2,786,949	+				-2.9
2,786,949	+				-2.6
2,786,949	+				-1.3
2,787,035	+				-1.0
2,787,036	-				-3.5
2,787,161	+		PP_2439	0.30	-1.6
2,787,162	-		PP_2439	0.30	-2.3
2,787,162	-		PP_2439	0.30	-1.6
2,787,195	-		PP_2439	0.36	-2.3
2,787,196	-		PP_2439	0.37	-2.9
2,787,270	-		PP_2439	0.50	-0.9
2,787,411	+		PP_2439	0.75	-2.6
2,787,411	+		PP_2439	0.75	-2.1
2,787,411	+		PP_2439	0.75	-1.6
2,787,412	-		PP_2439	0.75	-1.4
2,787,439	+		PP_2439	0.80	-2.1
2,787,439	+		PP_2439	0.80	-1.1
2,787,458	+		PP_2439	0.83	-3.1
2,787,458	+		PP_2439	0.83	-0.4
2,787,540	+				-3.3
2,787,551	+				+0.2
2,787,551	+				-2.4
2,787,551	+				-3.0
2,787,551	+				-2.6
2,787,552	-				-1.3
2,787,552	-				-1.4
2,787,552	-				+0.2
2,787,552	-				-1.0
2,787,577	+				-1.3
2,787,577	+				-3.3
2,787,599	+				-4.6
2,787,600	-				-0.8
2,787,603	+				-1.7
2,787,604	-				-2.5
2,787,677	+				-0.4
2,787,678	-				-0.4
2,787,696	-				+1.2
2,787,827	+				+0.7
2,787,827	+				+0.3
2,787,828	-				-4.4
2,788,105	+		PP_2440	0.27	+0.3
2,788,193	+		PP_2440	0.33	+0.6
2,788,193	+		PP_2440	0.33	-0.0
2,788,194	-		PP_2440	0.33	+0.8
2,788,197	+		PP_2440	0.33	+1.4
2,788,197	+		PP_2440	0.33	+0.8
2,788,229	+		PP_2440	0.35	+0.9
2,788,362	+		PP_2440	0.44	+0.3
2,788,363	-		PP_2440	0.44	+0.2
2,788,363	-		PP_2440	0.44	-0.5
2,788,363	-		PP_2440	0.44	+0.2
2,788,505	+		PP_2440	0.53	-0.1
2,788,506	-		PP_2440	0.53	+0.4
2,788,506	-		PP_2440	0.53	+0.3
2,788,506	-		PP_2440	0.53	+0.9
2,788,512	+		PP_2440	0.53	+0.9