Strain Fitness in Pseudomonas putida KT2440 around PP_2339

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
2,668,779	-		PP_2338	0.42	+0.1
2,668,779	-		PP_2338	0.42	+0.4
2,668,923	+				-0.3
2,668,923	+		PP_2338	0.52	-1.6
2,668,923	+		PP_2338	0.52	+0.2
2,668,923	+		PP_2338	0.52	+0.2
2,668,923	+		PP_2338	0.52	-3.5
2,668,924	-		PP_2338	0.52	-1.1
2,668,924	-		PP_2338	0.52	-0.3
2,668,944	-		PP_2338	0.54	-0.0
2,669,013	+		PP_2338	0.58	+0.8
2,669,013	+		PP_2338	0.58	-0.5
2,669,013	+		PP_2338	0.58	+0.0
2,669,014	-		PP_2338	0.58	-0.3
2,669,014	-		PP_2338	0.58	-0.6
2,669,090	-		PP_2338	0.63	-0.7
2,669,090	-		PP_2338	0.63	-1.5
2,669,111	+		PP_2338	0.65	-0.7
2,669,111	+		PP_2338	0.65	-0.4
2,669,226	+		PP_2338	0.73	+0.1
2,669,226	+		PP_2338	0.73	+0.6
2,669,226	+				-2.2
2,669,226	+		PP_2338	0.73	+0.8
2,669,226	+		PP_2338	0.73	-0.6
2,669,227	-		PP_2338	0.73	+0.2
2,669,227	-		PP_2338	0.73	-0.2
2,669,227	-		PP_2338	0.73	-0.8
2,669,227	-		PP_2338	0.73	+0.8
2,669,274	+		PP_2338	0.76	-0.6
2,669,274	+		PP_2338	0.76	+0.3
2,669,274	+		PP_2338	0.76	-0.0
2,669,489	-				-0.4
2,669,709	+				-2.5
2,672,364	-				+3.2
2,672,613	-				+3.4
2,672,613	-				+1.2
2,672,774	+		PP_2340	0.17	-3.0
2,672,775	-		PP_2340	0.17	-0.7
2,672,775	-		PP_2340	0.17	-2.2
2,672,837	+		PP_2340	0.29	-1.6
2,672,988	-		PP_2340	0.58	-1.3
2,672,999	+		PP_2340	0.60	-0.8
2,673,144	-		PP_2340	0.88	+1.1
2,673,152	+		PP_2340	0.90	-0.0
2,673,152	+		PP_2340	0.90	+0.0
2,673,152	+		PP_2340	0.90	+2.1
2,673,155	-				-0.8
2,673,229	+				+1.1