Strain Fitness in Pseudomonas putida KT2440 around PP_2335

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
2,661,860	-				-0.7
2,662,026	+		PP_2334	0.14	+0.7
2,662,026	+		PP_2334	0.14	-1.2
2,662,027	-		PP_2334	0.15	-1.7
2,662,027	-		PP_2334	0.15	-0.4
2,662,027	-		PP_2334	0.15	-1.5
2,662,239	-		PP_2334	0.38	-2.1
2,662,319	+		PP_2334	0.47	-1.3
2,662,320	-		PP_2334	0.47	+0.0
2,662,485	+		PP_2334	0.66	-0.7
2,662,485	+		PP_2334	0.66	-1.3
2,662,486	-		PP_2334	0.66	-1.3
2,662,558	-		PP_2334	0.74	-0.5
2,662,650	+		PP_2334	0.85	-2.1
2,662,650	+		PP_2334	0.85	-3.0
2,662,651	-		PP_2334	0.85	+0.1
2,662,735	-				-0.4
2,662,864	+				-0.8
2,662,947	+				-1.7
2,662,948	-				-2.3
2,662,948	-				-0.2
2,662,948	-				-1.0
2,662,956	+				-1.7
2,662,957	-				-0.9
2,662,957	-				-3.4
2,663,004	+		PP_2335	0.14	-0.4
2,663,005	-		PP_2335	0.14	-0.8
2,663,052	+		PP_2335	0.18	+0.1
2,663,253	+		PP_2335	0.36	-1.8
2,663,253	+		PP_2335	0.36	-0.0
2,663,254	-		PP_2335	0.36	-0.4
2,663,281	+		PP_2335	0.38	-0.1
2,663,282	-		PP_2335	0.38	-0.4
2,663,397	+		PP_2335	0.49	-3.1
2,663,398	-		PP_2335	0.49	-0.5
2,663,637	+		PP_2335	0.70	-0.8
2,663,637	+		PP_2335	0.70	-3.1
2,663,718	+		PP_2335	0.77	-1.4
2,663,787	+		PP_2335	0.83	-1.1
2,663,788	-		PP_2335	0.83	-1.3
2,663,788	-		PP_2335	0.83	-1.6
2,663,788	-		PP_2335	0.83	-1.4
2,663,788	-		PP_2335	0.83	-1.4
2,663,788	-		PP_2335	0.83	-2.4
2,663,788	-		PP_2335	0.83	-1.6
2,663,788	-		PP_2335	0.83	-1.9
2,663,928	+				+0.1
2,663,928	+				-1.8
2,663,929	-				-3.0
2,663,929	-				-0.7
2,663,977	+				-1.1
2,663,977	+				-1.9
2,663,977	+				+0.1
2,663,977	+				-1.5
2,663,977	+				+0.8
2,663,978	-				-1.3
2,663,978	-				-2.2
2,663,978	-				-0.2
2,663,978	-				+0.3
2,663,981	+				-1.7
2,663,981	+				-0.3
2,663,982	-				-1.7
2,663,982	-				-0.3
2,663,982	-				-1.1
2,663,982	-				-1.1
2,663,983	+				-0.2
2,663,984	-				-0.3
2,663,984	-				+0.5
2,663,984	-				+1.8
2,664,043	+				-0.4
2,664,094	+				+0.5
2,664,150	+				+0.3
2,664,184	-				-0.1
2,664,228	+				-1.6
2,664,244	-				+0.3
2,664,951	+				-2.1
2,664,952	-		PP_2336	0.31	-1.3
2,664,952	-		PP_2336	0.31	-0.3