Strain Fitness in Pseudomonas putida KT2440 around PP_2179

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
2,483,579	+		PP_2178	0.33	-0.7
2,483,579	+		PP_2178	0.33	-1.2
2,483,580	-		PP_2178	0.33	+0.5
2,483,580	-		PP_2178	0.33	-0.5
2,483,618	+		PP_2178	0.36	+0.0
2,483,619	-		PP_2178	0.36	-0.3
2,483,857	+		PP_2178	0.54	-0.8
2,483,903	+		PP_2178	0.57	-0.4
2,483,904	-		PP_2178	0.57	+1.2
2,483,904	-		PP_2178	0.57	+0.2
2,483,949	-		PP_2178	0.60	+0.9
2,483,965	+		PP_2178	0.62	+0.7
2,483,966	-		PP_2178	0.62	+0.2
2,484,072	-		PP_2178	0.70	+0.9
2,484,215	+		PP_2178	0.80	-0.1
2,484,216	-		PP_2178	0.80	+1.4
2,484,216	-		PP_2178	0.80	+0.4
2,484,216	-		PP_2178	0.80	-0.6
2,484,404	+				-0.5
2,484,404	+				+0.4
2,484,404	+				+0.9
2,484,405	-				+0.3
2,484,420	-				+0.8
2,484,420	-				-1.1
2,484,480	-				-1.4
2,484,521	+				-0.5
2,484,532	+				+1.9
2,484,565	+				-0.4
2,484,565	+				+0.1
2,484,565	+				+0.9
2,484,565	+				+0.4
2,484,565	+				-0.4
2,484,566	-				+0.8
2,484,648	-		PP_2179	0.11	+0.1
2,484,791	+		PP_2179	0.29	-0.7
2,484,791	+		PP_2179	0.29	-1.4
2,484,792	-		PP_2179	0.29	-0.7
2,484,792	-		PP_2179	0.29	-3.5
2,484,792	-		PP_2179	0.29	-1.3
2,484,886	-		PP_2179	0.41	+1.7
2,484,891	+		PP_2179	0.42	-4.4
2,485,044	+		PP_2179	0.62	-1.4
2,485,044	+		PP_2179	0.62	+0.6
2,485,044	+		PP_2179	0.62	-0.6
2,485,045	-		PP_2179	0.62	-1.4
2,485,126	-		PP_2179	0.72	-0.8
2,485,259	+		PP_2179	0.90	-0.0
2,485,308	+				-1.8
2,485,360	+				-1.4
2,485,538	+				+1.1
2,485,538	+				+0.5
2,485,538	+				+0.8
2,485,539	-				-0.3
2,485,539	-				-0.2
2,485,608	-		PP_2180	0.15	-0.3
2,485,661	+		PP_2180	0.19	-0.6
2,485,661	+		PP_2180	0.19	-0.5
2,485,662	-		PP_2180	0.19	-0.3
2,485,664	+		PP_2180	0.19	+0.8
2,485,664	+		PP_2180	0.19	+1.2
2,485,664	+		PP_2180	0.19	+0.0
2,485,665	-		PP_2180	0.19	-0.1
2,485,665	-		PP_2180	0.19	+0.8
2,485,665	-		PP_2180	0.19	-1.1
2,485,968	-		PP_2180	0.41	+0.1
2,486,129	+		PP_2180	0.53	-3.6
2,486,129	+		PP_2180	0.53	+0.4
2,486,130	-		PP_2180	0.53	-0.8
2,486,130	-		PP_2180	0.53	+0.8
2,486,130	-		PP_2180	0.53	+0.7
2,486,163	-		PP_2180	0.55	+0.1
2,486,209	+		PP_2180	0.59	-0.0
2,486,234	+		PP_2180	0.61	+0.1
2,486,238	-		PP_2180	0.61	+1.8
2,486,238	-		PP_2180	0.61	+0.4
2,486,288	+		PP_2180	0.65	-1.6
2,486,288	+		PP_2180	0.65	-0.6
2,486,289	-		PP_2180	0.65	+1.6
2,486,289	-		PP_2180	0.65	-2.4