Strain Fitness in Pseudomonas putida KT2440 around PP_2159

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
2,465,659	+				-0.8
2,465,659	+				+1.0
2,465,660	-				-0.4
2,465,660	-				+0.2
2,466,022	+		PP_2158	0.57	-0.0
2,466,022	+		PP_2158	0.57	+0.0
2,466,272	-				+1.5
2,466,325	+				-3.0
2,466,344	+				-1.0
2,466,345	-				+0.4
2,466,345	-				-0.4
2,466,399	+				-0.6
2,466,439	+				+0.8
2,466,455	+				-0.1
2,466,456	-				+0.8
2,466,477	-				-0.5
2,466,500	-				+0.7
2,466,628	+		PP_2159	0.21	+0.9
2,466,628	+		PP_2159	0.21	+0.6
2,466,681	+		PP_2159	0.31	+0.0
2,466,835	+		PP_2159	0.61	+0.5
2,467,005	-				+0.0
2,467,078	+				-0.9
2,467,078	+				-0.8
2,467,098	+				+1.7
2,467,099	-				-1.8
2,467,156	+				-2.0
2,467,157	-				-3.2
2,467,168	+				-1.2
2,467,168	+				-1.8
2,467,169	-				-2.1
2,467,262	-		PP_2160	0.18	-1.1
2,467,262	-		PP_2160	0.18	+0.0
2,467,262	-		PP_2160	0.18	-0.3
2,467,433	+		PP_2160	0.39	-1.4
2,467,433	+		PP_2160	0.39	-0.6
2,467,433	+		PP_2160	0.39	-1.9
2,467,434	-		PP_2160	0.39	+0.4
2,467,434	-		PP_2160	0.39	-1.7
2,467,573	+		PP_2160	0.56	+2.1
2,467,573	+		PP_2160	0.56	-1.0
2,467,706	-		PP_2160	0.72	+0.5
2,467,745	-		PP_2160	0.76	-2.5
2,467,855	+		PP_2160	0.90	+0.4
2,467,856	-		PP_2160	0.90	-2.0
2,467,943	-				+1.0
2,467,943	-				+1.3