Strain Fitness in Pseudomonas putida KT2440 around PP_2149

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
2,454,298	+		PP_2148	0.76	-0.8
2,454,298	+		PP_2148	0.76	+0.0
2,454,298	+		PP_2148	0.76	+0.8
2,454,340	+		PP_2148	0.77	+0.4
2,454,340	+		PP_2148	0.77	-0.3
2,454,341	-		PP_2148	0.77	+0.8
2,454,341	-		PP_2148	0.77	-2.5
2,454,343	+		PP_2148	0.78	-0.4
2,454,344	-				-1.2
2,454,344	-		PP_2148	0.78	-1.0
2,454,832	+				+0.1
2,454,886	+				-0.5
2,455,258	+				+2.3
2,455,283	+				+0.1
2,455,284	-				-0.2
2,456,758	+				+1.0
2,456,758	+				+0.5
2,456,758	+				+1.1
2,456,759	-				+0.9
2,456,854	+				+0.4
2,456,855	-				-0.4
2,456,863	-				+0.1
2,456,877	-				+0.3
2,456,877	-				-0.9
2,456,943	+				+0.0
2,456,961	+				+4.0
2,456,961	+				-0.5
2,457,027	-				+1.4
2,457,027	-				-0.0
2,457,027	-				-0.3
2,457,027	-				-1.8
2,457,039	-		PP_2150	0.11	-1.0
2,457,120	-		PP_2150	0.19	+1.0
2,457,563	-		PP_2150	0.63	-1.3
2,457,622	+		PP_2150	0.69	+0.3
2,457,633	+		PP_2150	0.70	+0.6
2,457,659	+		PP_2150	0.73	+0.1
2,457,660	-		PP_2150	0.73	-0.8
2,457,660	-		PP_2150	0.73	+0.3
2,457,684	-		PP_2150	0.75	-1.3