Strain Fitness in Pseudomonas putida KT2440 around PP_2095

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
2,386,241	+		PP_2094	0.29	+0.3
2,386,241	+		PP_2094	0.29	-1.9
2,386,401	-		PP_2094	0.42	-0.0
2,386,588	+		PP_2094	0.58	+0.5
2,386,589	-		PP_2094	0.58	-1.4
2,386,638	-		PP_2094	0.62	-0.1
2,386,638	-		PP_2094	0.62	+1.4
2,386,640	+		PP_2094	0.62	-0.2
2,386,640	+		PP_2094	0.62	-1.4
2,386,641	-		PP_2094	0.62	-1.9
2,386,641	-		PP_2094	0.62	+0.4
2,386,773	+		PP_2094	0.73	-1.8
2,386,865	+		PP_2094	0.80	-0.7
2,386,866	-		PP_2094	0.80	+1.1
2,386,866	-		PP_2094	0.80	+0.1
2,386,950	+		PP_2094	0.87	-0.2
2,387,019	+				+0.2
2,387,019	+				-1.7
2,387,020	-				+1.0
2,387,020	-				+0.2
2,387,020	-				-0.8
2,387,020	-				-1.9
2,387,020	-				-2.1
2,387,021	+				+0.3
2,387,022	-				-3.2
2,387,092	+				+0.7
2,387,119	+				-1.4
2,387,119	+				+1.3
2,387,120	-				-0.6
2,387,202	+				+0.3
2,387,244	+				+1.4
2,387,244	+				+0.5
2,387,244	+				+2.3
2,388,320	+				+0.9
2,388,384	+				+1.4
2,388,384	+				-1.6
2,388,437	-		PP_5502	0.14	+0.6
2,388,472	+		PP_5502	0.30	-2.3
2,388,573	+		PP_5502	0.77	+1.1
2,388,585	+		PP_5502	0.82	-1.0
2,388,585	+		PP_5502	0.82	+1.4
2,388,586	-		PP_5502	0.83	+0.5
2,388,586	-		PP_5502	0.83	+0.3
2,388,623	-				-0.3
2,388,623	-				+0.2
2,388,649	+				+0.6
2,388,649	+				+0.9
2,388,649	+				+0.4
2,388,649	+				-0.6
2,388,649	+				-0.4
2,388,650	-				+0.4
2,388,650	-				-0.6
2,388,650	-				+1.0
2,388,650	-				+0.5
2,388,650	-				+0.8
2,388,650	-				-0.9
2,388,765	-				-0.8
2,388,803	+				+0.4
2,388,803	+				+1.1
2,388,803	+				-1.0
2,388,804	-				-0.6
2,388,811	+				+0.7
2,388,835	-				+0.4
2,388,835	-				+0.1
2,388,991	-				-1.6
2,388,996	+				+1.4
2,388,996	+				+0.3
2,389,011	+				+1.2
2,389,011	+				+0.7
2,389,011	+				+1.1
2,389,011	+				-0.2
2,389,011	+				+1.3
2,389,011	+				-2.5
2,389,011	+				-0.1
2,389,012	-				-0.8
2,389,012	-				-0.6
2,389,012	-				+0.4
2,389,012	-				-2.0
2,389,012	-				-0.2
2,389,012	-				+0.2
2,389,012	-				+0.2
2,389,012	-				-0.6
2,389,118	+				-2.1
2,389,162	+				+1.1
2,389,180	+				-0.7
2,389,180	+				+0.1
2,389,181	-				+0.2
2,389,207	-				-1.0