Strain Fitness in Pseudomonas putida KT2440 around PP_2082

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
2,372,240	+				-0.2
2,372,314	+		PP_2081	0.19	-1.0
2,372,488	+		PP_2081	0.40	+0.3
2,372,488	+		PP_2081	0.40	-0.1
2,372,488	+		PP_2081	0.40	-0.3
2,372,488	+		PP_2081	0.40	-0.1
2,372,488	+		PP_2081	0.40	-0.6
2,372,488	+		PP_2081	0.40	+0.0
2,372,489	-				+0.0
2,372,489	-		PP_2081	0.40	+1.4
2,372,489	-		PP_2081	0.40	+0.1
2,372,552	-		PP_2081	0.48	+2.9
2,372,555	-		PP_2081	0.48	+1.8
2,372,617	+		PP_2081	0.56	-3.5
2,372,618	-		PP_2081	0.56	+1.6
2,372,618	-		PP_2081	0.56	+0.8
2,372,863	+		PP_2081	0.86	+1.7
2,372,864	-		PP_2081	0.86	+0.5
2,372,864	-		PP_2081	0.86	-0.3
2,372,864	-		PP_2081	0.86	+2.1
2,372,864	-		PP_2081	0.86	+1.8
2,372,940	-				+0.9
2,372,995	-				+0.9
2,373,022	-				-0.7
2,373,022	-				+2.6
2,373,022	-				+3.1
2,373,022	-				+1.4
2,373,022	-				+0.8
2,373,022	-				+1.8
2,373,086	-				+1.9
2,373,114	-				+0.6
2,373,114	-				+1.2
2,373,155	-				+0.3
2,373,155	-				+1.9
2,373,174	+				+0.3
2,373,174	+				+0.4
2,373,174	+				+1.7
2,373,179	+				-1.1
2,373,179	+				+1.7
2,373,180	-				+1.1
2,373,180	-				+1.7
2,373,180	-				+2.7
2,373,183	+				+2.6
2,373,183	+				+1.1
2,373,183	+				+2.3
2,373,183	+				+1.0
2,373,184	-				+1.2
2,373,184	-				+0.1
2,373,184	-				+0.5
2,373,308	-				+2.6
2,373,320	+				+2.4
2,373,482	-		PP_2082	0.13	+2.0
2,373,879	-		PP_2082	0.30	-0.1
2,373,960	-		PP_2082	0.33	+2.2
2,373,960	-		PP_2082	0.33	+1.3
2,373,973	+		PP_2082	0.34	+0.4
2,373,973	+		PP_2082	0.34	+1.7
2,374,092	-		PP_2082	0.39	+1.5
2,374,145	+		PP_2082	0.41	+0.1
2,374,145	+		PP_2082	0.41	-0.4
2,374,145	+		PP_2082	0.41	+2.4
2,374,145	+		PP_2082	0.41	+0.2
2,374,145	+		PP_2082	0.41	+2.0
2,374,145	+		PP_2082	0.41	+0.2
2,374,146	-		PP_2082	0.41	+2.4
2,374,146	-		PP_2082	0.41	+0.4
2,374,146	-		PP_2082	0.41	-1.2
2,374,146	-		PP_2082	0.41	-0.8
2,374,146	-		PP_2082	0.41	+1.3
2,374,208	+		PP_2082	0.44	+0.8
2,374,208	+		PP_2082	0.44	+0.7
2,374,208	+		PP_2082	0.44	+1.6
2,374,208	+		PP_2082	0.44	+0.4
2,374,265	-		PP_2082	0.46	+0.6
2,374,450	+		PP_2082	0.54	+3.4
2,374,749	-		PP_2082	0.66	+0.9
2,374,749	-		PP_2082	0.66	+2.3
2,374,823	+		PP_2082	0.70	+2.1
2,374,823	+		PP_2082	0.70	-0.5
2,374,823	+		PP_2082	0.70	+0.2
2,374,823	+		PP_2082	0.70	+1.9
2,374,824	-		PP_2082	0.70	+2.8
2,374,824	-		PP_2082	0.70	+0.7
2,374,824	-		PP_2082	0.70	+0.8
2,374,824	-		PP_2082	0.70	+0.3
2,374,824	-		PP_2082	0.70	+0.4
2,374,824	-		PP_2082	0.70	+0.0
2,374,871	+		PP_2082	0.72	+1.3
2,374,872	-		PP_2082	0.72	+1.1
2,374,919	+		PP_2082	0.74	+2.6
2,374,946	+		PP_2082	0.75	-0.6
2,374,946	+		PP_2082	0.75	+1.2
2,375,108	-		PP_2082	0.82	+0.8
2,375,399	+				+0.7
2,375,400	-				+0.4
2,375,646	+				-0.2
2,375,647	-				-0.7
2,375,667	-				+0.4
2,375,722	+				+0.9
2,375,860	+		PP_2083	0.21	-2.3
2,375,861	-		PP_2083	0.22	+0.6
2,375,861	-		PP_2083	0.22	+1.2
2,375,891	-		PP_2083	0.25	-1.6
2,376,090	-		PP_2083	0.45	-0.6
2,376,237	-		PP_2083	0.59	-0.7
2,376,279	-		PP_2083	0.64	-2.3
2,376,374	+		PP_2083	0.73	+0.1
2,376,375	-		PP_2083	0.73	+1.0
2,376,375	-		PP_2083	0.73	-3.0
2,376,375	-		PP_2083	0.73	-1.7
2,376,375	-		PP_2083	0.73	-0.2