Strain Fitness in Pseudomonas putida KT2440 around PP_2065

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
2,346,928	-		PP_2064	0.21	-1.3
2,346,928	-		PP_2064	0.21	-0.2
2,347,041	+		PP_2064	0.31	+1.7
2,347,240	+		PP_2064	0.49	-4.3
2,347,443	-		PP_2064	0.68	+0.2
2,347,485	+		PP_2064	0.71	+0.6
2,347,486	-		PP_2064	0.72	+0.1
2,347,486	-		PP_2064	0.72	+0.5
2,347,489	+		PP_2064	0.72	-0.9
2,347,489	+		PP_2064	0.72	-0.0
2,347,489	+		PP_2064	0.72	+0.2
2,347,489	+		PP_2064	0.72	+1.5
2,347,489	+		PP_2064	0.72	-0.8
2,347,490	-		PP_2064	0.72	+1.6
2,347,490	-		PP_2064	0.72	-0.0
2,347,490	-		PP_2064	0.72	-1.0
2,347,490	-		PP_2064	0.72	-1.3
2,347,490	-		PP_2064	0.72	-2.4
2,347,558	+		PP_2064	0.78	-0.3
2,347,558	+		PP_2064	0.78	-0.3
2,347,558	+		PP_2064	0.78	-0.2
2,347,929	-				+0.1
2,348,142	+		PP_2065	0.11	-2.8
2,348,164	-		PP_2065	0.12	+0.3
2,348,212	-		PP_2065	0.14	-0.4
2,348,212	-		PP_2065	0.14	-0.6
2,348,259	+		PP_2065	0.15	+0.4
2,348,259	+		PP_2065	0.15	+1.5
2,348,260	-		PP_2065	0.15	+0.5
2,348,413	+		PP_2065	0.20	+1.7
2,348,428	-		PP_2065	0.21	-0.2
2,348,428	-		PP_2065	0.21	-0.6
2,348,461	-		PP_2065	0.22	+1.1
2,348,461	-		PP_2065	0.22	+0.4
2,348,688	-		PP_2065	0.29	+0.1
2,348,736	+		PP_2065	0.31	+0.2
2,348,736	+		PP_2065	0.31	+2.0
2,349,126	+		PP_2065	0.43	+1.8
2,349,126	+		PP_2065	0.43	+0.7
2,349,126	+		PP_2065	0.43	+0.4
2,349,127	-		PP_2065	0.43	+0.7
2,349,127	-		PP_2065	0.43	+1.7
2,349,315	-		PP_2065	0.49	+0.3
2,349,315	-		PP_2065	0.49	-2.4
2,349,330	+		PP_2065	0.50	-0.3
2,349,330	+		PP_2065	0.50	+0.2
2,349,348	+		PP_2065	0.50	+0.2
2,349,987	+		PP_2065	0.71	+0.6
2,350,020	+		PP_2065	0.72	+0.5
2,350,021	-		PP_2065	0.72	-0.8
2,350,021	-		PP_2065	0.72	+0.5
2,350,083	+		PP_2065	0.74	+0.2
2,350,083	+		PP_2065	0.74	+1.1
2,350,083	+		PP_2065	0.74	+1.7
2,350,083	+		PP_2065	0.74	-0.2
2,350,083	+		PP_2065	0.74	+1.2
2,350,084	-		PP_2065	0.74	+1.2
2,350,191	-		PP_2065	0.78	-3.1
2,350,312	-		PP_2065	0.82	+0.1
2,350,491	+		PP_2065	0.87	-0.4
2,350,491	+		PP_2065	0.87	-0.2
2,350,491	+		PP_2065	0.87	+0.7
2,350,492	-		PP_2065	0.87	-0.2
2,350,492	-		PP_2065	0.87	+4.0
2,350,492	-		PP_2065	0.87	+0.8
2,350,492	-		PP_2065	0.87	+0.9
2,350,624	+				+1.8
2,350,625	-				-0.9
2,350,625	-				-0.7
2,350,625	-				+0.9
2,350,781	-				+1.1
2,350,875	+				-1.0
2,350,876	-				+0.4
2,350,921	-				-2.0
2,350,972	+				+0.6
2,350,972	+				+1.1
2,351,035	-		PP_2066	0.14	-0.1
2,351,151	+		PP_2066	0.29	-1.1
2,351,152	-		PP_2066	0.29	-0.5
2,351,152	-		PP_2066	0.29	+2.2
2,351,152	-		PP_2066	0.29	+0.8
2,351,152	-		PP_2066	0.29	-1.1
2,351,220	+		PP_2066	0.38	-0.4
2,351,221	-		PP_2066	0.38	-2.5
2,351,235	+		PP_2066	0.40	+1.4
2,351,235	+		PP_2066	0.40	-0.9
2,351,235	+		PP_2066	0.40	-1.9
2,351,235	+		PP_2066	0.40	-0.5
2,351,235	+		PP_2066	0.40	+0.8
2,351,235	+		PP_2066	0.40	-0.2
2,351,236	-		PP_2066	0.40	-0.9
2,351,236	-		PP_2066	0.40	-0.4
2,351,236	-		PP_2066	0.40	+1.0
2,351,236	-		PP_2066	0.40	-1.1
2,351,236	-		PP_2066	0.40	+0.3
2,351,305	-		PP_2066	0.49	-0.2
2,351,305	-		PP_2066	0.49	-1.1
2,351,305	-		PP_2066	0.49	+0.4
2,351,556	+		PP_2066	0.82	-0.1
2,351,557	-		PP_2066	0.82	-1.6
2,351,653	-				+0.9
2,351,668	+				-0.4
2,351,668	+				+0.6
2,351,668	+				-0.7
2,351,669	-				+0.2
2,351,669	-				+0.6
2,351,708	+				+0.3
2,351,708	+				-0.0
2,351,708	+				+2.1
2,351,708	+				-3.1
2,351,820	+				+1.1
2,351,821	-				+0.7
2,351,835	+				+0.7
2,351,835	+				+0.0
2,351,835	+				+0.3
2,351,835	+				+0.6
2,351,835	+				+0.2
2,351,836	-				-0.4
2,351,836	-				-2.5
2,351,847	+				-0.5
2,351,848	-				-0.0