Strain Fitness in Pseudomonas putida KT2440 around PP_1957

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
2,213,234	+				-1.8
2,213,383	+		PP_1956	0.21	-3.1
2,213,383	+		PP_1956	0.21	-4.4
2,213,384	-		PP_1956	0.22	+2.1
2,213,384	-		PP_1956	0.22	-1.1
2,213,434	-		PP_1956	0.27	-2.1
2,213,446	+		PP_1956	0.28	-3.7
2,213,484	+		PP_1956	0.32	-0.2
2,213,484	+		PP_1956	0.32	-3.0
2,213,484	+		PP_1956	0.32	-2.6
2,213,632	+		PP_1956	0.47	-3.9
2,213,633	-		PP_1956	0.47	+0.1
2,213,746	-		PP_1956	0.59	-1.4
2,213,821	-		PP_1956	0.67	+1.6
2,213,821	-		PP_1956	0.67	+0.9
2,213,909	-		PP_1956	0.76	+1.9
2,213,973	-		PP_1956	0.82	+0.9
2,214,021	+		PP_1956	0.87	-2.9
2,214,031	+		PP_1956	0.88	-1.9
2,214,137	+				-3.2
2,214,141	+				-1.9
2,214,192	-				-0.2
2,214,199	-				+0.1
2,214,217	+				-2.2
2,214,217	+				-2.1
2,214,252	+				+0.3
2,214,286	+				-0.5
2,214,286	+				+1.7
2,214,286	+				-0.7
2,214,290	-				-1.3
2,214,353	-		PP_1957	0.13	-2.1
2,214,354	+		PP_1957	0.13	+1.2
2,214,354	+		PP_1957	0.13	+1.1
2,214,354	+		PP_1957	0.13	-0.8
2,214,354	+		PP_1957	0.13	+1.0
2,214,354	+		PP_1957	0.13	-0.3
2,214,354	+		PP_1957	0.13	+1.4
2,214,354	+		PP_1957	0.13	-2.3
2,214,354	+		PP_1957	0.13	-0.4
2,214,355	-		PP_1957	0.13	+0.7
2,214,355	-		PP_1957	0.13	-0.8
2,214,355	-		PP_1957	0.13	+0.2
2,214,355	-		PP_1957	0.13	+0.9
2,214,355	-		PP_1957	0.13	+0.1
2,214,355	-		PP_1957	0.13	-0.0
2,214,361	-		PP_1957	0.13	-0.4
2,214,361	-		PP_1957	0.13	+1.5
2,214,400	+		PP_1957	0.18	+0.3
2,214,544	-		PP_1957	0.33	+1.3
2,214,650	+		PP_1957	0.44	-0.1
2,214,651	-		PP_1957	0.44	-0.0
2,214,651	-		PP_1957	0.44	+0.3
2,214,716	-		PP_1957	0.51	+0.4
2,214,751	+		PP_1957	0.54	-0.2
2,214,752	-		PP_1957	0.54	+1.6
2,214,759	+		PP_1957	0.55	+1.0
2,214,759	+		PP_1957	0.55	+1.0
2,214,759	+		PP_1957	0.55	+0.2
2,214,765	+		PP_1957	0.56	-0.5
2,214,766	-		PP_1957	0.56	+0.7
2,214,766	-		PP_1957	0.56	-0.1
2,214,766	-		PP_1957	0.56	+1.0
2,214,799	+		PP_1957	0.59	-0.0
2,214,800	+		PP_1957	0.59	-0.5
2,214,801	-		PP_1957	0.60	+1.6
2,214,801	-		PP_1957	0.60	+0.8
2,214,801	-		PP_1957	0.60	+0.1
2,214,801	-		PP_1957	0.60	+0.4
2,214,801	-		PP_1957	0.60	+1.1
2,214,801	-		PP_1957	0.60	+0.1
2,214,801	-		PP_1957	0.60	+0.5
2,214,837	+		PP_1957	0.63	+2.1
2,214,901	+				-0.2
2,214,902	-		PP_1957	0.70	+0.5
2,214,957	+		PP_1957	0.76	+1.3
2,214,986	-		PP_1957	0.79	-0.5
2,215,011	+		PP_1957	0.82	-0.5
2,215,012	-		PP_1957	0.82	+1.8
2,215,012	-		PP_1957	0.82	-1.4
2,215,054	+		PP_1957	0.86	+0.6
2,215,054	+		PP_1957	0.86	+0.8
2,215,055	-		PP_1957	0.86	-0.1
2,215,126	+				-0.5
2,215,127	-				+2.0
2,215,184	+				-0.1
2,215,185	-				+0.1
2,215,185	-				-0.4
2,215,185	-				-1.8
2,215,185	-				+2.1
2,215,262	+				+0.3
2,215,263	-				-0.3
2,215,263	-				+1.0
2,215,288	-				+1.0
2,215,294	-				+0.5
2,215,294	-				+0.9
2,215,326	+				-1.5
2,215,326	+				-0.2
2,215,362	-				-0.5
2,215,362	-				-1.6
2,215,445	-				+1.6
2,215,445	-				+1.2
2,215,514	-				-1.1
2,215,514	-				+0.3
2,215,514	-				+0.3
2,215,590	+				-2.7
2,215,810	+				+0.8
2,215,813	+				+0.3
2,215,814	-				+1.1
2,215,842	+				-1.7
2,215,845	-				+0.8
2,215,947	+				-0.5
2,215,947	+				+0.4
2,215,948	-				+0.9
2,216,080	-				+0.3
2,216,102	-				-0.4
2,216,116	+				+1.6