Strain Fitness in Pseudomonas putida KT2440 around PP_1941

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
2,195,436	-		PP_1940	0.89	-0.9
2,195,473	+				-0.9
2,195,527	-				+1.1
2,195,583	+				+0.8
2,195,584	-				+0.5
2,195,597	-				-0.1
2,195,762	-				+3.2
2,195,765	-				-1.0
2,195,787	-				+1.7
2,195,791	-				-1.0
2,195,791	-				-0.6
2,195,791	-				-3.7
2,195,822	-				-1.7
2,195,860	-				+0.7
2,195,885	+				+0.3
2,195,885	+				+0.1
2,195,886	-				-0.5
2,195,886	-				-2.4
2,195,919	+				+1.1
2,195,919	+				+0.6
2,195,919	+				+1.3
2,195,920	-				+2.4
2,195,949	+				+0.9
2,195,949	+				-0.3
2,195,949	+				-1.6
2,195,949	+				-0.0
2,195,949	+				+1.3
2,195,950	-				+1.2
2,196,017	-				+4.0
2,196,038	+				+2.0
2,196,113	-				-0.0
2,196,153	+				-1.2
2,196,154	-				+0.5
2,196,179	+				+1.3
2,196,180	-				+1.2
2,196,180	-				+1.4
2,196,275	+				-0.2
2,196,275	+				-0.4
2,196,275	+				-1.4
2,196,279	-				+0.8
2,196,303	+				-1.2
2,196,343	-				-0.6
2,196,347	+				+0.6
2,196,348	-				-0.1
2,196,389	-				+1.4
2,196,446	+				-4.5
2,196,447	-				-4.1
2,196,474	+		PP_1941	0.14	-3.6
2,196,475	-		PP_1941	0.15	-4.2
2,196,574	-		PP_1941	0.31	-2.5
2,196,574	-		PP_1941	0.31	-4.0
2,196,722	-		PP_1941	0.56	-3.7
2,196,766	+		PP_1941	0.63	-1.6
2,196,766	+		PP_1941	0.63	-1.7
2,196,766	+		PP_1941	0.63	-0.2
2,196,766	+		PP_1941	0.63	-4.2
2,196,766	+		PP_1941	0.63	-2.1
2,196,889	+		PP_1941	0.83	-4.1
2,196,890	-		PP_1941	0.83	-3.0
2,196,894	-		PP_1941	0.84	-4.0
2,196,990	-				+0.1
2,196,994	-				-1.0
2,197,233	+		PP_1942	0.21	-4.6
2,197,246	-		PP_1942	0.23	+0.5
2,197,410	+		PP_1942	0.40	-0.8
2,197,410	+		PP_1942	0.40	-0.4
2,197,423	-		PP_1942	0.41	+1.5
2,197,433	+		PP_1942	0.42	+0.1
2,197,434	-		PP_1942	0.42	+0.3
2,197,434	-		PP_1942	0.42	-0.5
2,197,434	-		PP_1942	0.42	-0.2
2,197,531	+		PP_1942	0.52	-2.5
2,197,531	+		PP_1942	0.52	-3.4
2,197,536	+		PP_1942	0.53	-0.7
2,197,548	+		PP_1942	0.54	-0.7
2,197,549	-		PP_1942	0.54	+0.8
2,197,554	-		PP_1942	0.55	+0.4
2,197,683	-		PP_1942	0.68	+0.8
2,197,782	+		PP_1942	0.79	-5.0
2,197,783	-		PP_1942	0.79	-1.9
2,197,849	+		PP_1942	0.85	-0.6
2,197,849	+		PP_1942	0.85	-2.3
2,197,862	+		PP_1942	0.87	-3.0
2,197,862	+		PP_1942	0.87	-1.7
2,197,862	+		PP_1942	0.87	-1.9
2,197,863	-		PP_1942	0.87	+0.1
2,197,863	-		PP_1942	0.87	-1.7
2,197,971	+				-0.5