Strain Fitness in Pseudomonas putida KT2440 around PP_1877

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
2,099,993	+				+0.1
2,099,993	+				+0.7
2,099,994	-				-1.7
2,100,000	+				+1.5
2,100,000	+				-1.1
2,100,001	-				-2.8
2,100,083	+				-0.6
2,100,137	+				+0.3
2,100,565	+		PP_1876	0.53	+1.3
2,100,629	-		PP_1876	0.60	-0.3
2,100,775	+		PP_1876	0.77	+0.1
2,100,775	+		PP_1876	0.77	-1.6
2,100,915	+				-1.4
2,100,915	+				+0.2
2,100,979	+				-0.1
2,100,979	+				-0.4
2,100,979	+				+0.7
2,101,021	+				+1.2
2,101,021	+				+1.6
2,101,021	+				+0.9
2,101,022	-				-0.2
2,101,022	-				+1.0
2,101,022	-				+0.3
2,101,023	+				+1.3
2,101,023	+				-0.4
2,101,024	-				-0.9
2,101,108	+		PP_1877	0.26	-2.7
2,101,109	-		PP_1877	0.26	-0.3
2,101,111	-		PP_1877	0.27	-1.6
2,101,144	+		PP_1877	0.34	-0.9
2,101,145	-		PP_1877	0.34	-0.6
2,101,145	-		PP_1877	0.34	-2.6
2,101,219	-		PP_1877	0.49	-1.0
2,101,219	-		PP_1877	0.49	-0.5
2,101,274	+		PP_1877	0.60	-2.9
2,101,274	+		PP_1877	0.60	-0.3
2,101,274	+		PP_1877	0.60	-2.6
2,101,274	+		PP_1877	0.60	-0.2
2,101,274	+		PP_1877	0.60	+0.5
2,101,274	+		PP_1877	0.60	-0.3
2,101,275	-		PP_1877	0.61	-0.3
2,101,275	-		PP_1877	0.61	-1.7
2,101,275	-		PP_1877	0.61	+0.5
2,101,275	-		PP_1877	0.61	-0.0
2,101,275	-		PP_1877	0.61	+0.6
2,101,275	-		PP_1877	0.61	+1.6
2,101,275	-		PP_1877	0.61	-1.2
2,101,275	-		PP_1877	0.61	+0.2
2,101,496	+				-1.1
2,101,496	+				+0.6
2,101,509	-				-0.6
2,101,547	+				-1.7
2,101,643	-		PP_1878	0.13	-1.7
2,101,679	+		PP_1878	0.18	+0.5
2,101,679	+		PP_1878	0.18	+1.8
2,101,697	+		PP_1878	0.20	+0.4
2,101,697	+		PP_1878	0.20	-0.4
2,101,697	+		PP_1878	0.20	-0.0
2,101,697	+		PP_1878	0.20	-0.6
2,101,697	+		PP_1878	0.20	+1.0
2,101,698	-		PP_1878	0.21	+0.0
2,101,698	-		PP_1878	0.21	+1.6
2,101,698	-		PP_1878	0.21	+0.8
2,101,698	-		PP_1878	0.21	-0.1
2,101,813	+		PP_1878	0.36	-4.1
2,101,813	+		PP_1878	0.36	-0.6
2,101,814	-		PP_1878	0.36	+1.2
2,101,814	-		PP_1878	0.36	-0.3
2,101,814	-		PP_1878	0.36	-0.5
2,101,814	-		PP_1878	0.36	-0.2
2,101,815	+		PP_1878	0.36	+0.5
2,101,816	-		PP_1878	0.36	-0.5
2,101,833	+		PP_1878	0.38	-1.9
2,101,936	+		PP_1878	0.52	+0.5
2,101,936	+		PP_1878	0.52	+0.5
2,101,937	-		PP_1878	0.52	-0.1
2,102,243	+				-1.0
2,102,244	-				+0.6
2,102,326	-				+0.9
2,102,326	-				-0.2
2,102,326	-				-0.4
2,102,346	-				+0.1
2,102,429	+				+0.4
2,102,430	-				-0.2
2,102,430	-				-2.2