Strain Fitness in Pseudomonas putida KT2440 around PP_1816

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
2,041,324	+				+2.2
2,041,328	+				+0.0
2,041,328	+				+0.3
2,041,415	-				+1.8
2,041,512	+				-1.6
2,041,512	+				+1.2
2,041,513	-				-0.1
2,041,513	-				+0.3
2,041,513	-				+0.7
2,041,556	-				+0.6
2,041,706	-		PP_1816	0.15	+0.3
2,041,717	+		PP_1816	0.16	-0.4
2,041,718	-		PP_1816	0.16	-1.5
2,041,771	+		PP_1816	0.22	-2.2
2,041,771	+		PP_1816	0.22	+0.6
2,041,772	-		PP_1816	0.22	+0.5
2,041,772	-		PP_1816	0.22	+0.4
2,041,807	+		PP_1816	0.25	-0.1
2,041,808	-		PP_1816	0.25	+0.1
2,041,808	-		PP_1816	0.25	+0.1
2,041,901	-		PP_1816	0.35	-0.1
2,041,901	-		PP_1816	0.35	+1.7
2,041,901	-		PP_1816	0.35	+0.0
2,041,960	+		PP_1816	0.41	-2.7
2,041,961	-		PP_1816	0.41	-2.3
2,041,961	-		PP_1816	0.41	-3.1
2,041,961	-		PP_1816	0.41	+0.3
2,042,153	-		PP_1816	0.60	-1.2
2,042,251	+		PP_1816	0.70	-0.4
2,042,251	+		PP_1816	0.70	+0.1
2,042,251	+		PP_1816	0.70	-1.0
2,042,252	-		PP_1816	0.70	+1.2
2,042,252	-		PP_1816	0.70	+0.3
2,042,328	+		PP_1816	0.77	-1.6
2,042,328	+		PP_1816	0.77	+0.5
2,042,329	-		PP_1816	0.77	-0.2
2,042,329	-		PP_1816	0.77	-1.4
2,042,346	+		PP_1816	0.79	+0.2
2,042,347	-		PP_1816	0.79	-0.7
2,042,347	-		PP_1816	0.79	-2.9
2,042,374	+		PP_1816	0.82	-2.0
2,042,374	+		PP_1816	0.82	-0.1
2,042,375	-		PP_1816	0.82	+0.6
2,042,375	-		PP_1816	0.82	-0.2
2,042,425	+		PP_1816	0.87	+1.5
2,042,425	+		PP_1816	0.87	+0.5
2,042,426	-		PP_1816	0.87	+0.6
2,042,426	-		PP_1816	0.87	+1.2
2,042,472	+				+0.7
2,042,585	-				-1.1
2,042,585	-				-0.0
2,042,598	+				-1.0
2,042,598	+				+0.0
2,042,599	-				-0.4
2,042,623	+				+0.9
2,042,624	-				-2.4
2,042,645	-				-1.5
2,042,693	+				-1.1
2,042,693	+				+0.8
2,042,694	-				-0.3
2,042,694	-				-2.4
2,042,694	-				+0.1
2,042,694	-				+0.0
2,042,694	-				+2.3
2,042,694	-				-0.2
2,042,759	-				-1.2
2,042,759	-				-0.6
2,042,759	-				-0.4
2,042,991	+		PP_1817	0.34	-0.2
2,042,992	-		PP_1817	0.34	-0.2
2,043,109	-		PP_1817	0.49	-0.5
2,043,109	-		PP_1817	0.49	-0.5
2,043,176	-		PP_1817	0.58	-0.6
2,043,201	+				+1.4
2,043,202	-		PP_1817	0.62	+0.1
2,043,256	-		PP_1817	0.69	+0.3
2,043,328	-		PP_1817	0.78	-0.1
2,043,420	+				+0.5
2,043,420	+				+1.9
2,043,420	+				+1.0
2,043,421	-				+0.2