Strain Fitness in Pseudomonas putida KT2440 around PP_1764

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
1,967,250	+				-2.6
1,967,304	+				-2.0
1,967,305	-				-2.8
1,967,310	+				-0.2
1,967,310	+				-2.4
1,967,311	-				-2.0
1,967,311	-				-2.6
1,967,311	-				-1.1
1,967,493	+		PP_1763	0.33	-2.8
1,967,493	+		PP_1763	0.33	-3.3
1,967,494	-		PP_1763	0.33	-2.6
1,967,506	-		PP_1763	0.35	-2.0
1,967,506	-		PP_1763	0.35	-0.7
1,967,506	-		PP_1763	0.35	-3.0
1,967,506	-		PP_1763	0.35	-3.3
1,967,708	+		PP_1763	0.62	-3.3
1,967,708	+				-0.6
1,967,829	+		PP_1763	0.78	-2.3
1,968,113	+				+0.0
1,968,248	+		PP_1764	0.15	-1.9
1,968,248	+		PP_1764	0.15	-2.3
1,968,248	+		PP_1764	0.15	-4.2
1,968,248	+		PP_1764	0.15	-4.4
1,968,248	+		PP_1764	0.15	-4.2
1,968,248	+		PP_1764	0.15	-4.0
1,968,249	-		PP_1764	0.15	-4.2
1,968,250	+		PP_1764	0.15	-4.0
1,968,250	+		PP_1764	0.15	-3.0
1,968,257	-		PP_1764	0.16	-2.9
1,968,801	+				-1.5
1,968,802	-				-4.3
1,968,822	+				-4.0
1,968,822	+				-0.6
1,968,822	+				-3.8
1,968,822	+				-2.5
1,968,822	+				+0.1
1,968,822	+				-3.1
1,968,823	-				-0.6
1,968,823	-				-1.0
1,969,559	-				+2.5
1,969,559	-				+0.7
1,969,559	-				-0.5
1,969,561	-				-0.9
1,969,588	+				-1.4
1,969,589	-				-0.3
1,969,810	-		PP_1766	0.17	-2.1