Strain Fitness in Pseudomonas putida KT2440 around PP_1681

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
1,874,437	+		PP_1679	0.71	-3.4
1,874,484	+		PP_1679	0.75	-1.4
1,874,485	-		PP_1679	0.75	-2.3
1,874,485	-		PP_1679	0.75	-2.8
1,875,193	+		PP_1680	0.80	-1.3
1,875,406	+		PP_1681	0.17	-1.1
1,875,406	+		PP_1681	0.17	-0.3
1,875,407	-		PP_1681	0.17	-1.9
1,875,407	-		PP_1681	0.17	-0.9
1,875,407	-		PP_1681	0.17	-3.5
1,875,464	+		PP_1681	0.25	-4.2
1,875,464	+		PP_1681	0.25	-0.0
1,875,472	-		PP_1681	0.26	-3.4
1,875,515	+		PP_1681	0.31	-2.2
1,875,516	-		PP_1681	0.32	-3.8
1,875,572	+		PP_1681	0.39	+0.5
1,875,572	+		PP_1681	0.39	-0.3
1,875,771	+		PP_1681	0.65	-3.5
1,875,771	+		PP_1681	0.65	-2.2
1,875,771	+		PP_1681	0.65	-0.7
1,875,771	+		PP_1681	0.65	-0.7
1,875,771	+		PP_1681	0.65	-4.0
1,875,771	+		PP_1681	0.65	-1.5
1,875,772	-		PP_1681	0.65	-1.7
1,875,777	+		PP_1681	0.66	-3.0
1,875,778	+		PP_1681	0.66	-1.5
1,875,778	+		PP_1681	0.66	-2.9
1,875,778	+		PP_1681	0.66	-3.6
1,875,778	+		PP_1681	0.66	-2.7
1,875,779	-		PP_1681	0.66	-2.8
1,875,779	-		PP_1681	0.66	-0.6
1,875,779	-		PP_1681	0.66	-2.2
1,875,779	-		PP_1681	0.66	-1.3
1,875,779	-		PP_1681	0.66	-3.8
1,875,819	+		PP_1681	0.72	-2.3
1,875,819	+		PP_1681	0.72	-2.9
1,875,819	+		PP_1681	0.72	-2.9
1,875,819	+		PP_1681	0.72	-3.6
1,875,819	+		PP_1681	0.72	-3.6
1,875,819	+		PP_1681	0.72	-2.1
1,875,819	+		PP_1681	0.72	-2.7
1,875,819	+		PP_1681	0.72	-3.6
1,875,820	-		PP_1681	0.72	-2.9
1,875,820	-		PP_1681	0.72	-3.7
1,875,820	-		PP_1681	0.72	-2.1
1,875,820	-		PP_1681	0.72	-3.1
1,875,820	-		PP_1681	0.72	-1.3
1,875,820	-		PP_1681	0.72	-2.6
1,876,007	+				-2.8
1,876,102	-				+0.2
1,876,148	+				-0.8
1,876,176	+				-1.2
1,876,176	+				+0.7
1,876,177	-				+0.4
1,876,177	-				+0.8
1,876,211	+				+0.2
1,876,211	+				-0.0
1,876,211	+				+1.3
1,876,211	+				+1.0
1,876,212	-				+0.6
1,876,417	-		PP_1682	0.20	-0.7
1,876,420	+		PP_1682	0.20	-0.4
1,876,420	+		PP_1682	0.20	-0.6
1,876,421	-		PP_1682	0.20	-1.8
1,876,421	-		PP_1682	0.20	+0.4
1,876,421	-		PP_1682	0.20	-0.0
1,876,585	+		PP_1682	0.34	+0.8
1,876,618	-		PP_1682	0.37	-0.7
1,876,657	+		PP_1682	0.40	+1.0
1,876,658	-		PP_1682	0.40	+0.2
1,876,738	+		PP_1682	0.47	+1.6
1,876,739	-		PP_1682	0.47	+1.5
1,876,849	+		PP_1682	0.56	+1.5
1,876,850	-		PP_1682	0.56	-0.5
1,876,850	-		PP_1682	0.56	-0.1
1,876,910	-		PP_1682	0.61	+0.5
1,876,910	-		PP_1682	0.61	-0.3
1,876,924	+		PP_1682	0.62	-0.1
1,876,924	+		PP_1682	0.62	+0.5
1,876,924	+		PP_1682	0.62	+0.2
1,876,924	+		PP_1682	0.62	-0.9
1,876,924	+		PP_1682	0.62	-0.3
1,876,924	+		PP_1682	0.62	+0.7
1,876,924	+		PP_1682	0.62	+0.4
1,876,924	+		PP_1682	0.62	+0.2
1,876,924	+		PP_1682	0.62	-0.2
1,876,924	+		PP_1682	0.62	+0.5
1,876,924	+		PP_1682	0.62	-0.0
1,876,924	+		PP_1682	0.62	-1.0
1,876,925	-		PP_1682	0.63	-0.3
1,876,925	-				+0.7
1,876,925	-		PP_1682	0.63	+1.4
1,876,925	-		PP_1682	0.63	-1.4
1,876,925	-		PP_1682	0.63	-1.6