Strain Fitness in Pseudomonas putida KT2440 around PP_1677

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
1,870,720	+				-1.4
1,870,720	+				+1.8
1,870,720	+				-0.7
1,870,720	+				+0.2
1,870,720	+				-0.6
1,870,721	-				-2.7
1,870,721	-				-1.5
1,870,721	-				-0.8
1,870,721	-				-3.6
1,870,722	+				-2.4
1,870,769	+				-2.4
1,870,770	-				-1.3
1,870,907	+		PP_1676	0.18	-3.5
1,870,908	-		PP_1676	0.18	-2.1
1,870,910	+		PP_1676	0.18	-3.4
1,870,911	-		PP_1676	0.19	-2.3
1,870,978	+		PP_1676	0.25	-1.5
1,870,978	+		PP_1676	0.25	-3.3
1,870,979	-		PP_1676	0.25	-0.9
1,870,979	-		PP_1676	0.25	-0.8
1,870,979	-		PP_1676	0.25	-1.3
1,871,013	-		PP_1676	0.29	-3.0
1,871,027	+		PP_1676	0.30	-2.5
1,871,028	-		PP_1676	0.30	+0.0
1,871,525	-		PP_1676	0.80	-3.2
1,871,550	-		PP_1676	0.83	-1.3
1,871,550	-		PP_1676	0.83	+0.6
1,871,558	-		PP_1676	0.84	-1.3
1,871,916	-		PP_1677	0.14	-1.0
1,872,034	-		PP_1677	0.22	-0.8
1,872,034	-		PP_1677	0.22	-3.0
1,872,388	+		PP_1677	0.46	-3.6
1,872,462	-		PP_1677	0.51	-2.4
1,872,462	-		PP_1677	0.51	-2.1
1,872,696	+		PP_1677	0.67	-3.0
1,872,793	+		PP_1677	0.74	-0.3
1,872,794	-		PP_1677	0.74	-1.5
1,872,875	-		PP_1677	0.80	-4.2
1,872,988	+		PP_1677	0.87	-2.6
1,872,988	+		PP_1677	0.87	-0.5
1,872,988	+		PP_1677	0.87	-1.9
1,872,989	-		PP_1677	0.87	-2.8
1,873,073	-				-0.1
1,873,073	-				-3.7
1,873,178	-				-1.8
1,873,259	+		PP_1678	0.17	-2.9
1,873,259	+		PP_1678	0.17	-0.2
1,873,586	+		PP_1678	0.79	-1.2
1,873,586	+		PP_1678	0.79	-3.2
1,873,586	+		PP_1678	0.79	-3.0
1,873,587	-		PP_1678	0.80	-2.6
1,873,668	+				-1.2
1,873,668	+				-1.3
1,873,669	-				-2.6
1,873,669	-				-2.0
1,873,689	+				-0.2
1,873,689	+				+1.1
1,873,689	+				+1.1
1,873,689	+				-3.1
1,873,689	+				+0.3
1,873,689	+				+0.4
1,873,690	-				-1.1
1,873,690	-				-3.2